CI01000304_06395132_06433884 (SKIV2L2)


Basic Information

Item Value
gene id CI01000304_06395132_06433884
gene name SKIV2L2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6395035 ~ 6433884 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06395132_06433884.mRNA
GTTTGAAGTCATGGCGGACGCATTTGGAGACGATTTGTTCAGCGTGTTTGATGAAGAACAGGCCGGTTCCAGCAAAAAGGCCACTCCAAAGTCCGCTGCTCAGGCAGGGAAGACGCCTGATAAAGCTGATAAACCGCAGAGCGATTCAGCAGCTGTCCGCAAAAGAGATGCAGAAAATGACGGTCCAGATGCGATGGTGCTTGGGAAAAGACAAAAGCTGGAAACAGTGTCAGCTGAGGAGATCAATCTGTCAGAGCTCATGCCTAAAGTGAAGGCGGAGCAGGTGGAGACAGTGGAGGGCTGCACTCATGAGGTGGTTCTTCCTGCCAATGAGGAATACACTCAGCTGAAACCACGCGTTGGAAAAGCTGCTAAGGAGTACCCATTCATACTCGACCCTTTCCAGCGTGAGGCCATCCTGTGCATTGATAACAACCAGTCTGTGCTTGTGTCGGCCCACACATCGGCAGGAAAGACAGTGTGTGCGGAATATGCCATTGCTCTGGCGCTCAGAGAAAAGCAGCGAGTCATCTTCACCAGTCCCATCAAGGCTTTGAGCAATCAGAAGTACAGAGAGATGTACGAAGAGTTCCAGGATGTGGGTCTGATGACCGGTGATGTCACTATTAACCCTACAGCTTCCTGTCTGGTCATGACCACCGAGATTTTGAGGAGCATGCTGTACAGAGGGTCAGAGGTTATGAGGGAGGTGGCATGGGTCATCTTTGATGAGATCCATTACATGAGAGACTCAGAGCGTGGAGTGGTTTGGGAGGAAACCATCATTCTACTGCCAGACAATGTGCACCATGTCTTCCTGTCAGCCACCATTCCCAACGCTCGACAGTTTGCAGAGTGGATTTGTCACCTCCACAAACAGCCCTGTCACGTGGTGTACACAGACTACCGCCCCACTCCACTGCAGCACTACGTCTTTCCAGCAGGGGGCGATGGACTCCATCTGGTTGTGGATGAGAACGGAGAGTTCAGAGAAGACAATTTTAATACAGCTATGCAGGTCCTGAGGGATGTGGGGGACACTGGAGGCAACACTGGGGGCAAATGGGACCCCAAAGGAAGAAGGGGTGGAACCAAAGGTCCATCTAACGTCTTCAAGATTGTTAAGATGATCATGGAAAGGAACTTCCAGCCGGTGATCATCTTTAGCTTCAGTAAGAAAGAATGCGAGGCCTATGCACTCCAAGTGGCTAAACTGGATTTCAACACAGACGATGAGAAAAAACTGGTGGAAGAAGTGTTCAGCAACGCCACAGACTGCCTCTCTGATGAAGATAAAAAGCTACCACAGGTAGAGCATGTTCTGCCGTTGCTGAAGAGAGGAATTGGAATTCATCATGGCGGCCTCCTCCCGATCCTCAAAGAGACCATTGAGATCCTGTTCTCTGAGGGGCTGCTAAAGAGGCCCTTGGCTTTATACTCTAGCACAGAGCGAGTGAGCGATGGAAGCTGCCATCTAAAACGTTTTGTGAGGAACATCTGTTTTTGGCGTACGCACCAAAGAGAACACAGCTCCGTACTAGTTGTCACGTTGTGGTGGGCTTACTGTACGAAGAGAGTGCAGGCTTCATGGCCACTGCAAAAGAACCGAAGAGCCCCGGAGGAAAAGGCCGTCCTCCTCATCCGTGTGCGTGCGGAAAGTGGATTTCTGCGAAGAATTCACACGGTCTCTGCATCTCCTGCTTGGGCGCTAAACGCTCAGGCAGCGTTGTCCAACCCCGAGGGCTGTCCTCACTGCACAACGTTCTCGGTTAAAACCCGAGACCGAAGGCTTCGCGTTGCAGTAGCTGGGAAGTCGGACCCATGCCTCTCTGCTCAACCCAGAGAGGAACCGATGGATTGTCCACAGGCCGCCAGCTCGTGGGGTGAGATGATGGAGAAGGTGTCATCCTTCCTTCCCCCGCTGTTCGAAGGGCTTCTCGAGGCTGGATGTTCAGGGAATGGAGGACTTGGGGATGGCGGATCCTTCCCCTGTAGAATCATCTGTGGCGAATCATTTGCACCCGAGTCGCAGGGCAGCACTCTCTTCAGCCGGGGCCTCGCTGCCAGGGAAAACAGAGCGCTTCGCTGCCTCTGTTTTTCGAAAGATTTAGAAATCTTCTGCACTGGCCGTCCGTGCTTTGAACGCGACGTCCCTCCTTACGGCCTATCAAGCGGAGTTTTTATAGGAGATGGGGCATCAGCTGGACTCCGAGGATACAGAATTCAATTTGCTGTAAAACCTCCTGTGTTCAATGGAGTGGTAATTTTAGTGGCCCAAGGGGAAGCAGCTCAGGTTTTAGAGGAAGAAATATCCTCTTTAATGAGAAAAGGAGTGATAAGAGTGATTCAAACGGAGGAAAGCCAGATGGGCTTCTACTCCCATTATTTTGTGATTCCCAAACGAGGGGGAGGTCTCCGTTTGATTTTAGATTTACGGGTCCTCAACAAACACCTCAGAAAATACAAATTCAAAATGCTTTCGCTCAGAACTTTGTGTCAAAGTATTCGTCAAGGGGATTGCTTCACCTCAGTGGACCTCCAGGATGCATATTTTCACATCACCTCTGGAGAGTATATCCAGATGTCAGGACGTGCTGGCAGAAGAGGAATGGACGAGAGGGGAATAGTCATTTTCATGGTGGATGAGAAGATGAGCCCTGCGGTGGGCAAACAGTTACTGAAGGGTTCGGCGGACCCTCTGAACAGTGCGTTTCACCTGACCTACAACATGGTGCTCAATCTTCTACGTGTGGAGGAGATCAACCCAGAGTACATGCTGGAGAAATCCTTCTACCAGTTCCAGCACTATAGAGCCGTGCCTGGTGTTGTGGAGAAGATGAAAAAGCTGGAGGAGGAGTATAATGCGATACGAATCCCCAATGAAGAGAGCGTGGTGACCTACTACAAGATCCGTCAGCAGCTGGCCAAGCTAGGCAAAGAAATCGAGGAATTTATTCACAAACCTAGATACTGCCTGCCCTTCCTGCAGCCAGGCAGGCTGGTCAGGGTGAAAAAGGAAGATCTGGATTTTGGTTGGGGTGCAGTTGTCAATTTCCAAAAGAAGGCAAATGTCAAGGCCGGAGGTGGTGATATTGACCCGTTGTTTGTGGTGGAAGTTCTGGTCCACTGCAGCAAAGACAGTGTGAAGAACGCAGCCACAGAAGCAGCCAAACCAGCAGGCCCAGGGGAAAAGGGTGAGATGCAGGTTGTTCCTGTGATTCTTCATCTCATCACCTCTATTAGCTCTGTGCGCCTGTATATCCCCAAAGACCTGCGGCCCTACGACAACCGACAAAGCATGCTCAAATCCATACAGGAGGTGCAGAAACGTTTCCCAGATGGCATTCCGCTGCTTGATCCCATAGACGACATGGGTATCAAGGATCCAGCACTGAAGAAGGTCATTCAGAAGGTGGAGGCATTCGAGCACAGGATGTACACGCACCCCCTGCACAGCGACCCCAACCTGGAGGCAGTTTACACTCTGTGTGAGAAGAAAGCACTGATTGCAGGGGACATTAAAGCGGCAAAGCGTGAGCTGAAGAGAGCTCGTACTGTGCTGCAGATGGACGAGCTGAAGTGCAGAAAGCGTGTGCTGCGGCGCCTGGGATTCGCCACTTCCTCTGATGTCATCGAGATGAAAGGGCGTGTGGCCTGTGAGATCAGCAGTGCAGATGAGCTGCTGCTGACAGAGATGGTGTTTAACGGGTTGTTCAACGACCTGACAGCGGAGCAGGCCACTGCGCTCCTCAGCTGCTTCGTCTTCCAGGAAAACGCTAATGAGATGCCCAAATTGACGGAGCAGCTGGCCGGACCGCTGCGACAGATGCAGGAATGTGCCAAGCGAATTGCTAAGGTGTCCGCAGAGGCCAAGCTGGACGTGGACGAGGACTCTTACCTGAATCAGTTCCGCCCACACCTGATGGATGTGGTCTACACCTGGGCCAACGGCTCCTCATTCTCTCAGATATGCAAAATGACCGACGTGTTTGAAGAGGCCTCTGCTCTGAGATTTGGCCATATCCGCAGCATGACGCGAGCATTGAAACACGGATCTCATGTCTTGCTGTCAAAAAAAATTCCCCTTCTGTCCGTGCTCCAGCTCCTGAGTGAGATTTTGGCTGTGTTCATGTGCATTAGCAAACAGCGAAGCTCTTGTAGCGATAAATTGTTGTCAGGGAGAGATGTTGTATGAAAAATTGAGAAGTTCCCTTATATTCTTTTTCTCCATCCCCCTTTCACCTCATGCTGGAATGGTCTCATTGGAGATCTTGGAACATCATGCCAATAAA

Function

symbol description
skiv2l2 ATP-dependent RNA helicase DOB1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12598 MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06395132_06433884.mRNA True 4292 mRNA 0.51 28 6395035 6433884

Neighbor

gene id symbol gene type direction distance location
CI01000304_06324113_06327228 HVCN1 coding downstream 66856 6324091 ~ 6328179 (-)
CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding downstream 79974 6298705 ~ 6315061 (-)
CI01000304_06270879_06289706 TBC1D10AB coding downstream 104525 6267565 ~ 6290510 (-)
CI01000304_06240590_06242902 APLNRB coding downstream 152023 6240466 ~ 6243012 (-)
CI01000304_06234231_06236303 NA coding downstream 158626 6234205 ~ 6236409 (-)
CI01000304_06461313_06465520 NA coding upstream 26572 6460456 ~ 6465520 (-)
CI01000304_06473293_06476260 NA coding upstream 39409 6473293 ~ 6476366 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 coding upstream 46859 6480743 ~ 6483986 (-)
CI01000304_06489010_06490993 NA coding upstream 54144 6488028 ~ 6492194 (-)
CI01000304_06507688_06509486 NA coding upstream 73658 6507542 ~ 6509622 (-)
G422246 NA non-coding downstream 70041 6324459 ~ 6324994 (-)
G422240 NA non-coding downstream 130990 6263762 ~ 6264045 (-)
G422232 NA non-coding downstream 163568 6231222 ~ 6231467 (-)
G422231 NA non-coding downstream 163867 6230942 ~ 6231168 (-)
G422256 NA non-coding upstream 13860 6447744 ~ 6448495 (-)
G422318 NA non-coding upstream 66835 6500719 ~ 6501031 (-)
G422321 NA non-coding upstream 77107 6510991 ~ 6519445 (-)
G422331 NA non-coding upstream 125903 6559787 ~ 6560009 (-)
G422332 NA non-coding upstream 126602 6560486 ~ 6560717 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1722088 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2129834 4263846 ~ 4265201 (-)
G419354 NA other downstream 4128794 2262502 ~ 2266241 (-)
G419353 NA other downstream 4158929 2229384 ~ 2236106 (-)
G422354 NA other upstream 197202 6631086 ~ 6631499 (-)
G422378 NA other upstream 310795 6744679 ~ 6783046 (-)
G422810 NA other upstream 1196275 7630159 ~ 7652703 (-)
G423386 NA other upstream 2428339 8862223 ~ 8865296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010716 skiv2l2,LOC107571110,LOC107744101 coding CM030129.1 CM030129.1 39917936 ~ 39972791 (+)