CI01000304_06434499_06453808 (DHX29)


Basic Information

Item Value
gene id CI01000304_06434499_06453808
gene name DHX29
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6434499 ~ 6453906 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06434499_06453808.mRNA
ATGGGTGGGAAGAAAAAGAAGTCGGCAGCAGTTCCCACGAGTGTGCAGCCGGCTGCTGCAGGGAACAGTGCTGCTGTGAACGCATCTGAATTCACGGGCAAAAAACACCAAAAGAGACCAAATAATGAGAAATCAGCCTCGAAGGAAAACAAACCCAGAGCTCCCAAAACATACAGTCTTAACACTAATGTGCAGACTGACACAAGCGTGTCTGATAAATCAATCCTGAAGGTTGTTATCCATCCAGAACTGGAAAAGAAGGTGATCAAGTTGATCAATGATTACAGGCAAGAACATGCTGATAAAGGACCAATATCTGGGAGACTCACGTCCAAAAAGTTGCTGGATCTGTACACGGCCTTGCAAAAGTTCCAGTTTAAGACGGAGCACATTGAGGAGGCCATGAAGAGCAGTATGCTGTATGGAGGTGATCTGCATTCAGCGCTCGACTGGCTCTGTCTGAATCTCAGAGACGATGAGCTACCGGAGGGATTCAGCCAAAAGATGCAAGAGGAGAAACAGAAGACTCGCCCTAAGTTCCAGCCTCCTAAAGAGGACAAGCAACAGCCGGTGACAAAGAAAGAAGCACCCAAAGAGGAGGAGAAACCGAAGGCAAAGGCTCCTATAAAAGATGGTGGTGGCAGTATGAAGGAGTGGATACTGCGCTACGCTGAACAATCTGAAGATCAGAGCAGCGAAGAAGATGAAAACAAGGACACAAGTGTTTATAACCCAGAGTTGGAGGAGAAGTTTGATCCTAATGACAGATACCTGCAGCTCAGCGCTCAGCTGTATGATGCCAAGGACATGGCTGCTGGATCAAAAGCCAAAAAAGACAAAACAGGGCAGAGGACAGCACAAGATCGGATCAGAGTCATCCAGCAAGAAATGAAGTCTTTGGAGTGTCATCCAATGTTCAATTCAGCTATCAAAGTTAAAGACACTCCTAAAGAGGAAAAGAAGCCAGTTACACTCACTGATGGCAAAGAAGAAATCAACTTCAACCTCTTTGAGGAAGCAGACACACCACCAGCAGAAAAAACGGGGAAAAAAAAGGAGCCCAAAGACATCCGAAACTTTGACTACACATCAAGGAGCTGGACTGGGAAGTCACCTAAACAGTTTTTGATTGATTGGTGCAGGAAAAACCTCCCGAAGAGCCCTCCACCTTCTTTTCAGAAAGTTGCAGTCGGGAGATATTGGAAATGCAAAGTACGCATTCAGAGGACTGATGATGTTTTGGAGGTGTGTCCCACTATCCTGACTGAAGACGGCATGCAGGCCCAGCACTTAGGAGCTACGTTAGCCCTTTATAAACTAGTCAAAGGACAGTCTGTGCATCAGCTGCTGCCGCCCACCTACCGTGACGTGTGGCTTGAGTGGCGAGATGACGAACAAAAAGAGGAGGAGCAAACCCGCTCCGCCATCAACAAACCACGTGACCAGTTCATCGAACGTCTGCTCACTCGCCTCAAACAGCAGCAGACCCTCCAACTGCAGGCCAAGCCGCAGGAAAGTCTCCAGGACACAGAACCAGAAGACTCCTGGGAGAACCTGGACATGCAGGAGGACCACGAGCCCAAGCGGGGAGGAGGCCTCATGATGGAGGAAGCATCCCGGAGGCTGTTCCTCAAACTGCGAGGCTCTCCTGTGGCACACAGGCTGCTGGCTGAGAGGGAGCAGCTGCCTGTTTTCCAGCACCGTGAGAAGGTACTAGAGGCTCTACGGCGCCACCGCGTGCTGGTGATTGCTGGGGAAACGGGAAGCGGGAAGAGCACACAGATTCCTCAGTTCATCCTGGAAGATCTCCTGGCTGCTGGGGAGGCCGCGCAGCCGTGCAATGTGGTGGTGACGCAACCCAGAAGGATTTCAGCCACAAGTCTGGCCAGCAGGGTGTCACAGGAGCTGGGGAGTGAGGACGGACCGGGAGGCAAGAATTCACTGTGTGGATACCAGATCCGTATGGAGAACCGCTCTAGTGACGCCACACGACTGCTGTACTGCACCACTGGAGTTCTGCTGCGCAAACTACAGCAGGACCAGCTCCTCAGCTCCCTCACTCACATCATCGTGGACGAGGTTCACGAGCGAAGCGTACAGTCAGATTTCCTTCTCACCATACTAAAAGAAGTGGTGCATAAGCGCACAGATCTGCGTTTGATCTTGATGAGCGCTACAGTCGACTGTCAGAAGTTTGCCAACTACTTCAACCGCTGTCCTGTGGATATCGTGGAGGAGACTGGTTATGTGCTGGAGCAGGACTCGGAGTACTGTCAGAAGTATGTGGAAGAAGATGATGAGATCAACATCAGCATCTCACAGAAAGGAGGGAAGACTGTTCAGCACCAGGAGCTGATTGTGAGGGACTCTGGTTCAGGTTGGGATCTGGGCCCTGAGCTGGATCACTTCAGCAGCCGGACACGACACGTCCTGCAGTACATGAACCCCAGCAAGATAAATATGGATCTGATATTAGACCTGCTGGCATACCTGGATAAATCACCTCAGTTTCGTGATGTGGATGGTGCGGTTCTGGTCTTCCTCCCAGGCCTGGCCCATATTCAACAGCTGCATGATCTACTGACCACAGACAAGAGATTCAGCTCAAAGAACAGATACAAGCTAGTCGCCCTCCACTCCACACTGTCATCTCAGGACCAGTCTTCTGCATTTACAGTGCCCCCTGCTGGAGTGAGAAAGATTGTTCTGTCCACAAACATCGCTGAGACTGGCGTCACCATTCCTGATGTGGTCTTTGTCATTGACACAGGAAAAACAAAAGAAAATCGGTATCATGAAAGCAGCCAGATGAGCTCTCTGGTGGAGACGTTTGTGAGTAAAGCCAGCGCCCTCCAGAGGCAGGGAAGGGCAGGACGTGTTCGAGAGGGCTTCTGTTTCCGCCTTTATCCCAAATTCAGATTTGAGAGCTTCATTGACTACTCCATCCCTGAGATTCTCAGAAAGTGTGAATATGGCTCTCCAGAGGATTTCCTGTGTCGAGCTCTTGATGCGCCTCAGCCACAGGCCGTGTGTAATGCTGTCAGCCTGCTGAGGAAGATCAGCGCCTGTCAGCAAGATAGCCACACCCTAACACCGCTTGGTCATCACTTGGCTGCCCTTCCAGTCAATGTCAAGATTGGCAAAATGCTTATCTTCGGTGCCATTTTTGGCTGCCTTGAACCCATTGCCACCATTGCAGCAGCCATGTCTGAGAAGTCCCCGTTCGCTATTCCTATGAGCAGGAAGGAGGAGGCCAACCTGGCTAAATCTGCTCTAGCAGTTGCAAACTCAGATCACATGACCGTCTACAATGCTTACCTTGGGTGGAAGAGTTCACAGAGTGAGGGAACTCGTGCAGAGATGGCCTACTGCAGGAGACACTTCCTGAATCGCACTGCCCTCATGACGATTGAGGATGTGAAGCGGGAGCTCATTAGGATGGTGGAGCAGGCCGGTTTCACAGCCTCCAAGCCCAGTCGGACGCCTCGCTCTCACCCCAGCTCTGAACTGAAAGTCCTCGGCTCGCTCTCCAGGCAGGACATCTCTGTTCTCAATGCCGTGTTGACTGCAGGTCTGTATGATAGCGTGGGCCGTATCCTCTGCACTCCCTCTGTGGACGTTCAGGATCGGGTGGCGTGTGTGGTTGAGACGGCTCAGGGGAAAGCCCATGTTCACCCCTCCTCCGTCAATCGCTTCCTACAGACCCACGGTTGGCTGCTCTTCCAGGAAAAGGTGAAATACTCTAAGGTGTTTCTAAGAGACACCACATTGATCTCTCCTTTATCAATGCTGCTGTTTGGAGGTGATATTGACGTGCATCACAGGGAGAGACTCATCTCTCTGGATGGATGGATCAACTTCCAGGCTCCAGTCAGAATTGGCGTGATATTCAAACACCTTCGCAAGCTTATGGACTCCCTCCTGGAGAGGAAATTGGCCAACCCTAGAATGAATTTGGAAGATGAGAAGACCATACAGATCATCACAGAACTGATCAAGTCAGAAAACATGCTCTGAGGAAGTGCCTGTTTGTATTCAATCATGAATTGACTATAAATTAAATGTTGACAAACCTCACTGAGGGGTGAGACTGTAAATTATATTGCCAAACCATA

Function

symbol description
dhx29 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and translation initiation factor activity. Predicted to be involved in positive regulation of translational initiation. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Orthologous to human DHX29 (DExH-box helicase 29).

GO: NA

KEGG:

id description
K18995 DHX29; ATP-dependent RNA helicase DHX29

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06434499_06453808.mRNA True 4115 mRNA 0.51 27 6434499 6453906

Neighbor

gene id symbol gene type direction distance location
CI01000304_06384004_06392366 NA coding upstream 41756 6384004 ~ 6392743 (+)
CI01000304_06331541_06373056 CSGALNACT1A, CSGALNACT1 coding upstream 61291 6331216 ~ 6373208 (+)
CI01000304_06317696_06323233 NA coding upstream 110672 6317696 ~ 6323827 (+)
CI01000304_06315989_06316538 NA coding upstream 117961 6315433 ~ 6316538 (+)
CI01000304_06215366_06219149 GOLPH3 coding upstream 214759 6215095 ~ 6219740 (+)
CI01000304_06496953_06504096 NA coding downstream 42584 6496490 ~ 6504793 (+)
CI01000304_06523767_06526359 NA coding downstream 69799 6523705 ~ 6526427 (+)
CI01000304_06529800_06545548 ATP6V0A2A coding downstream 75894 6529800 ~ 6546501 (+)
CI01000304_06547442_06555032 NA coding downstream 93536 6547442 ~ 6555367 (+)
CI01000304_06556398_06582069 OSBP2 coding downstream 102199 6556105 ~ 6583204 (+)
G421131 NA non-coding upstream 124839 6304075 ~ 6309660 (+)
G421184 NA non-coding upstream 138674 6295460 ~ 6295825 (+)
G421182 NA non-coding upstream 140881 6293404 ~ 6293618 (+)
G421124 NA non-coding upstream 164740 6267568 ~ 6269759 (+)
G421156 NA non-coding upstream 202068 6232134 ~ 6232431 (+)
G421201 NA non-coding downstream 22323 6476229 ~ 6476435 (+)
G421202 NA non-coding downstream 22773 6476679 ~ 6476903 (+)
G421203 NA non-coding downstream 23248 6477154 ~ 6477391 (+)
G421204 NA non-coding downstream 41752 6495658 ~ 6495882 (+)
G421211 NA non-coding downstream 105576 6559482 ~ 6559828 (+)
G421162 NA other upstream 191502 6241233 ~ 6242997 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 1257708 5173426 ~ 5176791 (+)
G420445 NA other upstream 2130667 4303336 ~ 4303832 (+)
G418981 NA other upstream 4340821 2092494 ~ 2093678 (+)
G418116 NA other upstream 5559250 872670 ~ 875249 (+)
CI01000304_07352697_07354032 NA other downstream 898743 7352621 ~ 7354396 (+)
G421435 NA other downstream 1030235 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 1524722 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 1778088 8231293 ~ 8235655 (+)
CI01000304_08671901_08672203 NA other downstream 2217864 8671770 ~ 8672555 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002598 dhx29 coding NC_007121.7 CM002894.2 8154874 ~ 8197049 (-)