CI01000304_06461313_06465520


Basic Information

Item Value
gene id CI01000304_06461313_06465520
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6460456 ~ 6465520 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06461313_06465520.mRNA
ATGTGAATGACTGTACAAAGACATTCTGTTGTATAATTTATGTCACTCTCTCATACTTCAAGCTGTATGCCAAAACACAGCAAGCCAAGCAGACAGCAGAGGAAGCCGACAGGATATACAGTCAGAATGTGTCTGTGCTGGGGAAGATGAGAGAGGAGTGGCTGAAAGAGCATGTCAAAGCATGTGAGTTTTTTGAGAAACAGGAAGTGGAGAGGATCAACATGCTGAGGAATGTAGTGTGGACCCATCTCAACCATCTCTCCCAGCAGTGTGTCACCAGCGACGAGCTCTATGAGGAAGTGAGGAAGTCACTGGAGCAATGTAACATTCAAGAAGACATTGAGCATTTTATCAACCTCAGAAGAACCGGAGACAAACCACCAGATGATCCTTTATACTCAACTGTAGCAGAACCAGGGTACAGTCTAATACGATACTAACAAGAACGTAACTCGGTAAGAATTCTTGAAAGAATGTAACCTTGATGTACAATTTACAAACAGTAATATTAATGCTGGAGCAAGTATTATACAGTTACTGATGTTGTTTATGAATCCCTTGAATGTTTCCTTGAGGAAGTGGTGTTTTAGTTACTGTTATTTTCTTTTCTAGTTTTCGCAAACCCTTCTGCTGCTCAGTAGGAATACAGTGAAGGCATTTTTTCATCAAGGGCTGAAAAGCACATTGGTTATCTTCTAATGCTGGTGCCAGCTTCCTCATACTCTCTGGTGGGAATATATTTGTAGCCTGGCATGTAAGGGTGTTCTTATCTGTGTGTAAAAAGCATTTTTAACTTGCTAACCTAAAATCCACCCTAGCAAACAGAGTGAGCTTTGACACTATTGTGTAGTGATAAAAAGTTTAATCTTGAAGTTCTCACTACATTGATAACATCATCAAAACAACATTGTATAAATCTTTGTATTTGAATTACTGTAAAAAAAGATTGACTATTATAGATTAAGGAATTTAAAGGTGGAGTGTACAACATTGCACCACTAGTGGCACCAAATGGAATTGCATTTTGTTTGAGCAGCTTGACTGGTCTCAACCAATGGTGTGAGTTTGGGGGCGGGACTACCATTTTGGCCAGCCAATGGAAGACAGAAGGGGACTATTTTTTTTTGTCATTATTGTTACATTTTTGTTTGGTTCAGCTAGTGGTACACACTTCACCTTTAAAGCAGCTTTAAGGCCAGCTTTAAAAGGCCACAAAAAATATAATTTATTTCTAATGTAATATTCTAGACAGTGTCAATACACAGTCCTGCACCACTGGATACATTTCTTCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06461313_06465520.mRNA True 1297 mRNA 0.39 5 6460456 6465520

Neighbor

gene id symbol gene type direction distance location
CI01000304_06395132_06433884 SKIV2L2 coding downstream 26572 6395035 ~ 6433884 (-)
CI01000304_06324113_06327228 HVCN1 coding downstream 132277 6324091 ~ 6328179 (-)
CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding downstream 145395 6298705 ~ 6315061 (-)
CI01000304_06270879_06289706 TBC1D10AB coding downstream 169946 6267565 ~ 6290510 (-)
CI01000304_06240590_06242902 APLNRB coding downstream 217444 6240466 ~ 6243012 (-)
CI01000304_06473293_06476260 NA coding upstream 7773 6473293 ~ 6476366 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 coding upstream 15223 6480743 ~ 6483986 (-)
CI01000304_06489010_06490993 NA coding upstream 22508 6488028 ~ 6492194 (-)
CI01000304_06507688_06509486 NA coding upstream 42022 6507542 ~ 6509622 (-)
CI01000304_06515961_06519125 NA coding upstream 50376 6515896 ~ 6519125 (-)
G422256 NA non-coding downstream 11961 6447744 ~ 6448495 (-)
G422246 NA non-coding downstream 135462 6324459 ~ 6324994 (-)
G422240 NA non-coding downstream 196411 6263762 ~ 6264045 (-)
G422232 NA non-coding downstream 228989 6231222 ~ 6231467 (-)
G422318 NA non-coding upstream 35199 6500719 ~ 6501031 (-)
G422321 NA non-coding upstream 45471 6510991 ~ 6519445 (-)
G422331 NA non-coding upstream 94267 6559787 ~ 6560009 (-)
G422332 NA non-coding upstream 94966 6560486 ~ 6560717 (-)
G422343 NA non-coding upstream 146248 6611768 ~ 6612117 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1787509 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2195255 4263846 ~ 4265201 (-)
G419354 NA other downstream 4194215 2262502 ~ 2266241 (-)
G419353 NA other downstream 4224350 2229384 ~ 2236106 (-)
G422354 NA other upstream 165566 6631086 ~ 6631499 (-)
G422378 NA other upstream 279159 6744679 ~ 6783046 (-)
G422810 NA other upstream 1164639 7630159 ~ 7652703 (-)
G423386 NA other upstream 2396703 8862223 ~ 8865296 (-)

Expression


Co-expression Network