CI01000304_06480836_06483554 (SUB1L2, SUB1A, SUB1)


Basic Information

Item Value
gene id CI01000304_06480836_06483554
gene name SUB1L2, SUB1A, SUB1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6480743 ~ 6483986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06480836_06483554.mRNA
ACTGTTTTGATCTTTGCTTCTGTTTCTTTGATTTTGTTGCTTATTACTCACAGCCTATTCATTTAGTTTCATTTGATGTTTGGTAAGTAGCAACACTAGTTGGTGTCATTTGCACTAACCTTTATGCTGCTGAGGGTTTGCACTAACCTTTGAGTAATTTTGAGCCAGAAACACATTTTGAGTAAATTTGTATAAAATAGACATTCCTTTGAAGTAAGGTTAAGTACTGTGAACAACATGAACATAATGCCACATTGTGTTTAATGTCATAATATTGTTCAAATAGGCCTAAATCATGGTGCTGGAAGAGTCCTATCAGAGAAGTCTATTCTGTTTGAATGTTTCATGGAGGAAAAATAATAATACTAATGATTGTGAAAAGAATGATAATGAAAGTTTTGGGTAAATTGTTCTTTTAACTTAGCACTGGTAATGGATAGGCAAAACTACACTTCCCATAATCCACTTCTTCAAGGGCGCTTCCTGGTACAGCCTGTAAGCGCGCGCTCAGCAGCACTGGTTTCGAAGAAACGGACGATCGCGCGCATTGAATGTGCCTGTGTTTCAACTCAGTTTACTCTACATTTATCTTACAACATCAGAATGCCTAAGTCAAAGGAAGTGTTGTCTTCTTCCTCAGACAGTGACTCTGACAGTGAAGTTGATACGAAGGCCAAGAGAAAGAAGCAGACAACACCAGAAAAGCCATCAAAGAAACAAAAAAGTGGAGAAACTTCAAAAGTGTCATCTGCCTCCAAAAGCAGCAGCAGCAGCAGTAAAAATGATAATATGTTCCAGATAGGAAAGATGAGGTATGTGAGTGTCCGGGATTTCAAGGGGAAAGTGCTGATTGATATCCGGGAATACTGGATGGACCAGGAAGGTGAAATGAAACCAGGCAGGAAAGGGAATCGAGTGCTTTTTCTGTTTATGGTCTTGGCTTCTGAATGCATCTAGATTTATACCTATGTGTTTGTTTGGTTCACTGAGTTAATATTTTACATACTTAAGATGTATGTTGTGCAACCAGGTGATTGTCTGTCAAATAAA

Function

symbol description
sub1a Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SUB1 (SUB1 regulator of transcription).
sub1 Enables identical protein binding activity; single-stranded DNA binding activity; and transcription coactivator activity. Involved in negative regulation of DNA metabolic process and regulation of transcription by RNA polymerase II. Located in nucleolus and nucleoplasm. Part of transcription regulator complex.

GO:

id name namespace
GO:0070062 extracellular exosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06480836_06483554.mRNA False 1050 mRNA 0.38 5 6480743 6483986

Neighbor

gene id symbol gene type direction distance location
CI01000304_06473293_06476260 NA coding downstream 4377 6473293 ~ 6476366 (-)
CI01000304_06461313_06465520 NA coding downstream 15223 6460456 ~ 6465520 (-)
CI01000304_06395132_06433884 SKIV2L2 coding downstream 46859 6395035 ~ 6433884 (-)
CI01000304_06324113_06327228 HVCN1 coding downstream 152564 6324091 ~ 6328179 (-)
CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding downstream 165682 6298705 ~ 6315061 (-)
CI01000304_06489010_06490993 NA coding upstream 4042 6488028 ~ 6492194 (-)
CI01000304_06507688_06509486 NA coding upstream 23556 6507542 ~ 6509622 (-)
CI01000304_06515961_06519125 NA coding upstream 31910 6515896 ~ 6519125 (-)
CI01000304_06659869_06667425 NA coding upstream 175838 6659824 ~ 6667499 (-)
CI01000304_06706476_06715064 GGCX coding upstream 222084 6706070 ~ 6715064 (-)
G422256 NA non-coding downstream 32248 6447744 ~ 6448495 (-)
G422246 NA non-coding downstream 155749 6324459 ~ 6324994 (-)
CI01000304_06270879_06289706 TBC1D10AB non-coding downstream 210984 6267565 ~ 6290510 (-)
G422240 NA non-coding downstream 216698 6263762 ~ 6264045 (-)
G422232 NA non-coding downstream 249276 6231222 ~ 6231467 (-)
G422318 NA non-coding upstream 16733 6500719 ~ 6501031 (-)
G422321 NA non-coding upstream 27005 6510991 ~ 6519445 (-)
G422331 NA non-coding upstream 75801 6559787 ~ 6560009 (-)
G422332 NA non-coding upstream 76500 6560486 ~ 6560717 (-)
G422343 NA non-coding upstream 127782 6611768 ~ 6612117 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1807796 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2215542 4263846 ~ 4265201 (-)
G419354 NA other downstream 4214502 2262502 ~ 2266241 (-)
G419353 NA other downstream 4244637 2229384 ~ 2236106 (-)
G422354 NA other upstream 147100 6631086 ~ 6631499 (-)
G422378 NA other upstream 260693 6744679 ~ 6783046 (-)
G422810 NA other upstream 1146173 7630159 ~ 7652703 (-)
G423386 NA other upstream 2378237 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 3084370 9566730 ~ 9575706 (-)

Expression


Co-expression Network