CI01000304_06659869_06667425


Basic Information

Item Value
gene id CI01000304_06659869_06667425
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6659824 ~ 6667499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06659869_06667425.mRNA
ACCTTCTTGTCGCTATATACAGGGTCACATTTGAGAATTTTACATTAGTTCTTCTAGCCAAGGTGACTGAAGACATGACTGCCTTCAAACTGGAGTTCCTCTTCTTCACTGCCCTTCTGGGTTCAGTCGAAATAAGATCTGTTGATACAACAGGCATGAAGAATGTCCCGATGGGTGCGGATGACACTGTGATGGGCGACATGTGTCAGGACTGCACTCAGATTTTTGAGCTCCTGAAGGACCTCGTTTCCAATCAAGACTTCCAGGCCAAATTAACTGCCACTCTCGAGCAAGTGTGTGATAAGTTGCCTGCCCAATTCTCTCAAGTCTGCCACACTGAGGTGGAGAAGATGCTTCCTCTGGCCATCACCTTCATTAGCAGTCTGATGAATCCAAGTGACATCTGTACTTTTCTTGGACTGTGTGGAGGTCGTAACAGTGGGAAGATGAAAGATATGTTTCTTAATCACATGGCAAAAACTGTACAAATGCCAATTATGAAGAGCATCATAACTGTCCTGCTTGAGAGTTTGTGCAGAGAGTTTCCTACTCTGATTCAGCCACAGTGCAATAAGTTGGTTGAAAAATACGTCCAACGGTTGGTTGACATGCTACTGAACAATACCTCTCCTAACTTCATATGCACTCTCCTTCATCTTTGTGAAATATGGGAGCATCCCGTTAATGGTTAGAGTTCAGACTATTTTTTGCATTTAACACTTCTGAAAATTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06659869_06667425.mRNA True 737 mRNA 0.43 6 6659824 6667499

Neighbor

gene id symbol gene type direction distance location
CI01000304_06515961_06519125 NA coding downstream 140699 6515896 ~ 6519125 (-)
CI01000304_06507688_06509486 NA coding downstream 150202 6507542 ~ 6509622 (-)
CI01000304_06489010_06490993 NA coding downstream 167630 6488028 ~ 6492194 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 coding downstream 175838 6480743 ~ 6483986 (-)
CI01000304_06473293_06476260 NA coding downstream 183458 6473293 ~ 6476366 (-)
CI01000304_06706476_06715064 GGCX coding upstream 38571 6706070 ~ 6715064 (-)
CI01000304_06725873_06727044 NA coding upstream 58200 6725699 ~ 6727044 (-)
CI01000304_06738434_06742551 STOML2.L, STOML2, STML2 coding upstream 70755 6738254 ~ 6742551 (-)
CI01000304_06867535_06870134 NA coding upstream 199618 6867117 ~ 6870134 (-)
CI01000304_06881372_06883185 RNF208 coding upstream 213555 6881054 ~ 6883185 (-)
G422359 NA non-coding downstream 22376 6637226 ~ 6637448 (-)
G422357 NA non-coding downstream 23684 6635833 ~ 6636140 (-)
G422355 NA non-coding downstream 26038 6631651 ~ 6633786 (-)
G422353 NA non-coding downstream 28949 6630578 ~ 6630875 (-)
G422343 NA non-coding downstream 47707 6611768 ~ 6612117 (-)
G422373 NA non-coding upstream 19429 6686928 ~ 6687167 (-)
G422420 NA non-coding upstream 239886 6907385 ~ 6970870 (-)
G422429 NA non-coding upstream 304532 6972031 ~ 6972231 (-)
G422436 NA non-coding upstream 314589 6982088 ~ 6983628 (-)
G422437 NA non-coding upstream 316196 6983695 ~ 6983943 (-)
G422354 NA other downstream 28325 6631086 ~ 6631499 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1986877 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2394623 4263846 ~ 4265201 (-)
G419354 NA other downstream 4393583 2262502 ~ 2266241 (-)
G422378 NA other upstream 77180 6744679 ~ 6783046 (-)
G422810 NA other upstream 962660 7630159 ~ 7652703 (-)
G423386 NA other upstream 2194724 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2900857 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 3069247 9736746 ~ 9738777 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001896 sftpba coding NC_007121.7 CM002894.2 7798087 ~ 7805010 (+)