CI01000304_06881372_06883185 (RNF208)


Basic Information

Item Value
gene id CI01000304_06881372_06883185
gene name RNF208
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6881054 ~ 6883185 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06881372_06883185.mRNA
GAAAAGAAACAACACTACCTATGAGTCTGCATATCTGCGCCACCCTGGGAAAAGTGTTGGAAGCAAGTCTTTTTATACTGTGCACTGGCTGGAAGTCTTTGCCCATCTGTGCCACATAAAGACTCAGGGTGACGCAGCCTGTGACCAAGGAGGGGCTTTGAGACAGCAATGGACAAACCCATCCGTCCTCATGTCCCCTGCAATGGCTGAATGTCCTCCCCCAATCATCCAGTCGGAGAAGTTCCCTCGGGAGTGTCCGGTCCCCGTGACCCAGCCTCGCTACGCACCACCTCCCCGCGTGGCCTGGGATGGAGGAGGCGAGGGCGAGGTTATTGTTAACCAGGCATGTGGGGACCTGTCCATGGAGGTCAATGGGAACACTGTGGTCCCACCCAGACCCCTAGTGTCTCCTCCTGCCCCTGTCCTCCGCCGTGAAGCCAGTTATCTTGCCCAGCGCAAGGCCAGCACCTCCGACATCTGCTACCATCAGTTCCACTACAAGATGGACGACATCTTGTATGAGTCCTGTCCCAAGTACAAGTTCATCTCCTGCCCCACTTGCCGCCGCGAGACCGTGCTCTTCACCGACTACGGGCTAGCCGCGCTGGCCATCAACACCAGCATCCTCAGCCGGCTGCCGCCCGATCCAGCGGGGACCGTGCAGTGGGGCAGCGATGGTGACCGCAGCTGCTATCAGACGGTCCGCCAGTACTGTCAGTCGGCTTGCACTTGCCACATTGCCAACCCTCTTTCCTCCTGTGGCATCATGTAGACCGGAGAGGGCTGATGACCGGCACAACTCATCCCAAAAGCTATCCACATCTGAAAACCTTGAGTCACACACATTCACCTTCTCCAAAGGGTCACAGATGTATCTGTATATTTAATAGCACAGGATGCTATGTGGACTTGAAGTGAAAAGGACACTTGTGCGCAAAGACAGATATGAAATATCAGAGTAAATGTATTTTATGTATGAACTGATTTCCCTATAGCCCTCGATCTCTTGTTTGGATGTGTTCGTCATTGACATCTCTTTACATGGGAATGCCAAGGGAAGTCTATCTCCCCCCATACTGGGTATAATAAA

Function

symbol description
rnf208 Enables ubiquitin-protein transferase activity. Involved in protein autoubiquitination. Located in cytosol and nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06881372_06883185.mRNA True 1090 mRNA 0.54 4 6881054 6883185

Neighbor

gene id symbol gene type direction distance location
CI01000304_06867535_06870134 NA coding downstream 10920 6867117 ~ 6870134 (-)
CI01000304_06738434_06742551 STOML2.L, STOML2, STML2 coding downstream 138503 6738254 ~ 6742551 (-)
CI01000304_06725873_06727044 NA coding downstream 154010 6725699 ~ 6727044 (-)
CI01000304_06706476_06715064 GGCX coding downstream 165990 6706070 ~ 6715064 (-)
CI01000304_06659869_06667425 NA coding downstream 213555 6659824 ~ 6667499 (-)
CI01000304_06914589_06924928 SLC5A1, SGLT1 coding upstream 30645 6913830 ~ 6925152 (-)
CI01000304_06931421_06933921 YWHAG.S, 143G2, 143G1, YWHAH, YWHAG.L, YWHAG2, YWHAG, YWHAG1 coding upstream 47553 6930738 ~ 6934059 (-)
CI01000304_06935639_06967113 DEPDC5 coding upstream 52343 6935528 ~ 6969054 (-)
CI01000304_07051182_07056250 NA coding upstream 167943 7051128 ~ 7056250 (-)
CI01000304_07065444_07081535 GNAZ coding upstream 182034 7065219 ~ 7081970 (-)
G422373 NA non-coding downstream 193887 6686928 ~ 6687167 (-)
G422359 NA non-coding downstream 243606 6637226 ~ 6637448 (-)
G422357 NA non-coding downstream 244914 6635833 ~ 6636140 (-)
G422355 NA non-coding downstream 247268 6631651 ~ 6633786 (-)
G422353 NA non-coding downstream 250179 6630578 ~ 6630875 (-)
G422420 NA non-coding upstream 24200 6907385 ~ 6970870 (-)
G422429 NA non-coding upstream 88846 6972031 ~ 6972231 (-)
G422436 NA non-coding upstream 98903 6982088 ~ 6983628 (-)
G422437 NA non-coding upstream 100510 6983695 ~ 6983943 (-)
G422439 NA non-coding upstream 103684 6986869 ~ 7028505 (-)
G422378 NA other downstream 98008 6744679 ~ 6783046 (-)
G422354 NA other downstream 249555 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 397559 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 2208107 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2615853 4263846 ~ 4265201 (-)
G422810 NA other upstream 746974 7630159 ~ 7652703 (-)
G423386 NA other upstream 1979038 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2685171 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 2853561 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 3270261 10160458 ~ 10163762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002677 RNF208 coding NC_007121.7 CM002894.2 17102902 ~ 17103651 (-)
bowfin (Amia calva) AMCG00020257 NA coding CM030127.1 CM030127.1 13848344 ~ 13849084 (-)