CI01000304_07024195_07048285 (SLC5A1, SGLT1)


Basic Information

Item Value
gene id CI01000304_07024195_07048285
gene name SLC5A1, SGLT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7024195 ~ 7048285 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_07024195_07048285.mRNA
CCTGCTTCAAACACCATCAAAATGGGGGCAGATTATTTTGGATTCTCTTTTCTCCGCAATGAGAATAGAAGAAATGTCACCGTTCATATTAACAATCCAGCGGACATCTCTGTGATTGCTATATATTTTCTGGTGGTTCTGGCTGTGGGAATATGGGCAATGGTACGAACCAATCGAGCCACAGTAGGAGGCTTTTTCCTGGCTGGCCGAAGTATGGTGTGGTGGCCGATTGGAGCCTCTCTCTTTGCAAGTAACATTGGAAGTGGACATTTTGTGGGACTAGCAGGAAGTGGAGCAGCTGCTGGTGTCGCCATCGGAGGCTTTGAGTTGAATGCTCTTGTTGTTGTGATTTTAATGGGATGGCTCTTCGTGCCCATCTACATAAAGGCTGGGGTCGTTACCATGCCGGAGTATTTGAAGAAACGCTTTGGTGGGCAGCGTATCCGTATCTACCTCTCCGTGCTGTCCCTGTTTCTCTACGTTTTCACCAAAATCTCTGGGGATATGTTTGCAGGAGGCGTTTTCATCAACCAGGCTCTGGGACTGAACATTTACCTGGCCGTGATTATTCTGCTGCTGATTACAGCTTTTTATACAGTAACAGGTGGTCTAGCTGCAGTCATCTACACAGACACCCTGCAGACCGTCATCATGGTTGTGGGATCATTCATTCTCATGGGCTTTGCGTTCACTGAGGTCGGAGGCTATGAGAACTTCAAGGACCGCTATATGAATGCGATCCCGTCAGTGGTGGGTGTAAACATCAGTGAATCGTGCTACACCCCTCGTGCAGACTCATTCCACATGTTCAGAGACCCAATTACCGGCGATCTGCCCTGGCCTGGAATGATCTTTGGTCTTACTATCCAGGCTGGCTGGTATTTTTGCACTGACCAGGTGATTGTGCAGCGCTGTCTGTCTGCCAAGAGCATGTCTCATGTGAAAGGTGGCTGCATCCTGTGTGGTTATCTCAAACTTCTGCCCATGTTCATCATGATTTTCCCTGGTATGATCAGCAGAGTACTGTACACAGGTAAGAAGTGGAAATGGTATGTGGACTTTGAGATAAGAAATTCTGTCAATCCAAAAGTAATGTGCACCCATTCTTGTGACATTTTTGTATGCAATGTGCATCAGAAGGTCAGTGAACAGTTAAAGACTATTAGTGAAACTAATGTTTGTGTCTGCGTGAGCCCCAGTAACTGTCCCACGATCATCTGCGGTGTGCACTACCTGTATTTTGCAATCATCCTCTTCACCCTGTCCTGTGTATTGATACTGGTCATCTCCCTCATGACCAAACCCATTGACGACAAACATCTGTACAGACTCTGCTGGAGTTTGAGGAACAGCACTGAGGAGAGGATAGATCTGGAGTTAGATGACTGGACTGAAGAACAGGATTCCAGCTCTATGGAAAAAGAAGAGATGCGTGAGGAACCAGGCTTTTGTAAGAAGGCCTACAACTGGTTCTGTGGCTTTGATCAAGGCAATGCCCCAAAACTGACTAAAGAACAGGAGGCAGAGATGAAGCTGAAGCTCACTGACACCACTGAGAAACCTCTATGGAGAAACGTGGTCAACGCTAACGCTATTATCCTCCTTGCCGTCTGCATCTTTTTCCAGGGTTTCTTTGGT

Function

symbol description
slc5a1 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; liver; pronephric duct; pronephric proximal convoluted tubule; and pronephric proximal straight tubule. Orthologous to human SLC5A1 (solute carrier family 5 member 1).
sglt1 solute carrier family 5 (sodium/glucose cotransporter), member 1

NR:

description
Na+/glucose cotransporter

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14158 SLC5A1, SGLT1; solute carrier family 5 (sodium/glucose cotransporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_07024195_07048285.mRNA True 1638 mRNA 0.47 13 7024195 7048285

Neighbor

gene id symbol gene type direction distance location
CI01000304_06986969_07013827 NA coding upstream 8361 6986828 ~ 7015834 (+)
CI01000304_06875225_06878962 NA coding upstream 144887 6873700 ~ 6879308 (+)
CI01000304_06864719_06866382 NA coding upstream 157750 6864719 ~ 6866445 (+)
CI01000304_06844730_06857162 ATP8B5B coding upstream 166962 6843662 ~ 6857233 (+)
CI01000304_06804498_06839363 UNC13BB, UNC13B coding upstream 184452 6803920 ~ 6839743 (+)
CI01000304_07154005_07160649 SPPL3 coding downstream 105720 7154005 ~ 7161125 (+)
CI01000304_07236677_07272874 KCNN2 coding downstream 187860 7236145 ~ 7272960 (+)
CI01000304_07288867_07299197 DRG1, DRG1.L coding downstream 240582 7288867 ~ 7299754 (+)
CI01000304_07314354_07323703 SLC20A1.L, SLC20A1.S, SLC20A1B, SLC20A1 coding downstream 265412 7313697 ~ 7324618 (+)
CI01000304_07334198_07342123 PIGO coding downstream 285777 7334062 ~ 7342298 (+)
G421300 NA non-coding upstream 40379 6983549 ~ 6983816 (+)
G421297 NA non-coding upstream 51974 6972018 ~ 6972221 (+)
G421292 NA non-coding upstream 61052 6959488 ~ 6963143 (+)
G421260 NA non-coding upstream 99160 6913997 ~ 6925035 (+)
G421280 NA non-coding upstream 121900 6897910 ~ 6902295 (+)
G421310 NA non-coding downstream 32140 7080425 ~ 7097508 (+)
G421358 NA non-coding downstream 71525 7119810 ~ 7120041 (+)
G421362 NA non-coding downstream 78308 7126593 ~ 7126872 (+)
G421365 NA non-coding downstream 80208 7128493 ~ 7128732 (+)
G421311 NA non-coding downstream 127196 7175481 ~ 7177256 (+)
G421162 NA other upstream 781198 6241233 ~ 6242997 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 1847404 5173426 ~ 5176791 (+)
G420445 NA other upstream 2720363 4303336 ~ 4303832 (+)
G418981 NA other upstream 4930517 2092494 ~ 2093678 (+)
G418116 NA other upstream 6148946 872670 ~ 875249 (+)
CI01000304_07352697_07354032 NA other downstream 304364 7352621 ~ 7354396 (+)
G421435 NA other downstream 435856 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 930343 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 1183709 8231293 ~ 8235655 (+)
CI01000304_08671901_08672203 NA other downstream 1623485 8671770 ~ 8672555 (+)

Expression


Co-expression Network