CI01000304_07212382_07216898 (SKA1)


Basic Information

Item Value
gene id CI01000304_07212382_07216898
gene name SKA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7211830 ~ 7216898 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_07212382_07216898.mRNA
AAATGAATCACTGTGAGCTTGAAGAAGTGACACAACATATTAACAACAAAATTTCTATGATTAAAAGACTCCTGGAGCTTCGAGCTGTTGCAAAAGATCCAGAAAAACGGGGGACCCTTCTCAAAATCGAACAAGAAGTCACTGCCATCAATGAGCTTCTTGATCGCTTTGAGAGATATGTGGGCCAGCAGAGAGACTTGCTGAAGCATTTGAAGGATCTAGAAGGGTTTTTCCAGGAGGACGTACAGGATGCCCATCACCTCAAGAACAACACCCCTCCGCACATGCCCAAAAGGGGCCAACAAGCAGCTCCGCAAGGAGGAGGACAGGTGGCAGTTCAGAGCAGGCAAACAGATGCGCCCCCCGCCCCTCAAGAACAGGTGCCGCCCAGGAAACCTCTGCGCAACCAGATCAAAGAGATGGAGTTCATTACCGTCCCAGAGTTTGACAGCATACCACCGTACATGAAAGGCCGTGTGACGTATGACCAGCTGAACGCAGCGGTGCAAAGCATCAACACAACTGTGACTGCAAAATACAAGATCCTCCATCAGTCAGTCAAAACCCTGAACAACGTGTCCCGCACACTCCACCAGCGCTTTAAAGACCAAGAGACAAAGGACACCAAGGGTCAGTTTTTCATCGTGGAGCAAGACATCAGAGAGTTCACCCAGCTGAAGGTGGACAAACGGTTTGTGGGCATGTTGAACATGCTACGCCACTGCCAGCGTCTTAAGGAGGTCCGAGGCGGTGGTGTCACACGTTTTATCCTGCTATAAGGGTCATCTCCATCACATCACTTTGAATGGAGTTTTAAAAGACACTCTGCACTAAAGGATATGTTTGTTTGAGAGCTGTTTGCCGTGGGATGATCTTCAGCATCCAAATTGTTTGTCAAATCATCATTATGTACATTAAAACCTGACGGAGAGATGGATTTATGTGTAAAATATGTTCTGTTATTAACTTGCCTAATGAAACTTTCACATTTTGTTCTACAACATAAATTACACACAGTTAAACATCAAATGTTGAAACCGTTGTGTGCTCAAATATAGCACAAAAACTCATTATTTTGCTGAACTAACGTCTCTTCAATTATTGTCAACAACAGACTTAATTTACTCATAAATCCTGTTCTAAAAACCCATTAGATATTCCCAGGAGCGCCGCATGGTGAATTTGCATTCCAGGTCGGCCTACAAATTGACATTGTGAATACACAGTTGATGTTGTAGATGGGTCACTTTATCTGTGATGATGAAATTATAAATTGATTGCTGTATTATTTATATTGGTGGAAAGTGGAAAAATATTGGAGCTCAAATAAA

Function

symbol description
ska1 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including chromosome segregation; mitotic cell cycle; and regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm; kinetochore; and microtubule. Predicted to be part of outer kinetochore. Predicted to be active in mitotic spindle and spindle microtubule. Is expressed in optic tectum and retina. Orthologous to human SKA1 (spindle and kinetochore associated complex subunit 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_07212382_07216898.mRNA True 1331 mRNA 0.43 6 7211830 7216898

Neighbor

gene id symbol gene type direction distance location
CI01000304_07203008_07211715 NA coding downstream 115 7202964 ~ 7211715 (-)
CI01000304_07183432_07198305 NT5C2L1 coding downstream 13525 7182622 ~ 7198305 (-)
CI01000304_07065444_07081535 GNAZ coding downstream 129860 7065219 ~ 7081970 (-)
CI01000304_07051182_07056250 NA coding downstream 155580 7051128 ~ 7056250 (-)
CI01000304_06935639_06967113 DEPDC5 coding downstream 242776 6935528 ~ 6969054 (-)
CI01000304_07218265_07232779 SMARCAD1B coding upstream 1322 7218220 ~ 7232779 (-)
CI01000304_07282197_07285838 NA coding upstream 64583 7281481 ~ 7285838 (-)
CI01000304_07303509_07309222 STARD7 coding upstream 85926 7302824 ~ 7311711 (-)
CI01000304_07325899_07328203 NA coding upstream 108750 7325648 ~ 7328203 (-)
CI01000304_07464639_07466430 NA coding upstream 247337 7464235 ~ 7466430 (-)
G422473 NA non-coding downstream 83807 7127412 ~ 7128023 (-)
G422469 NA non-coding downstream 89319 7122251 ~ 7122511 (-)
G422468 NA non-coding downstream 91813 7119731 ~ 7120017 (-)
G422466 NA non-coding downstream 99456 7112155 ~ 7112374 (-)
G422439 NA non-coding downstream 183325 6986869 ~ 7028505 (-)
G422512 NA non-coding upstream 60101 7276999 ~ 7277246 (-)
G422442 NA non-coding upstream 105125 7322023 ~ 7325559 (-)
G422521 NA non-coding upstream 121990 7338888 ~ 7340699 (-)
G422528 NA non-coding upstream 135766 7352664 ~ 7354386 (-)
G422536 NA non-coding upstream 150990 7367888 ~ 7368822 (-)
G422378 NA other downstream 428784 6744679 ~ 6783046 (-)
G422354 NA other downstream 580331 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 728335 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 2538883 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2946629 4263846 ~ 4265201 (-)
G422810 NA other upstream 413261 7630159 ~ 7652703 (-)
G423386 NA other upstream 1645325 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2351458 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 2519848 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 2936548 10160458 ~ 10163762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002690 ska1 coding NC_007121.7 CM002894.2 17543276 ~ 17550931 (-)