CI01000304_07218265_07232779 (SMARCAD1B)


Basic Information

Item Value
gene id CI01000304_07218265_07232779
gene name SMARCAD1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7218220 ~ 7232779 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_07218265_07232779.mRNA
AGCCAGACACTATCATTCCAGAGACTCCTGAAACCAAACGTCCATCAGGATCATCTCTCTCCATTGCCCTTTCTGACTCTGACTCTGACATTGAGATATCAGGCAGTTCCATGATGCCAGTTAGATCAAGGCAAGTAGAGCCTAAGAAAAAAGCGGCATCATCTGAGGATGAGATATCACCATCTGACGAGGAGGAAGTAACTGTGGTGAAGATGGAGAGAAGGCTGAAGCACAAAAGAAAAAGATCTACCTCACAAGCGCTACAAACACAACAGAAGGGTTCACAAATGGTGACCAATAGCACGCATCCCTCGCTCCTGAAGACATCTGGGACAGCAGCGTCTGATTCGGTCCACGAGAGGAGACAGCAGCATATGTGTGGCACTTCCCAGGAGAGCGACAGCTCCCATTGTAGCAGAAAGAGGCGGGCTTCTGAGATGGATGCTTCAGAGGAAGAGGGGCTTAAGCCAAGATCTAAAGATCAGGAACGTATGCTGAAAAAACTCCAGAGGAAGTTCCCTCATTTGAACAAGAATGAACTCAGGGATGTGCTTCAGGAACACAACTGGCTTATTGAAGATGCCTTGGAAACACTACGAATGTTCTCTGATCTTGTGGTCGAGTCTGAGGATGATGCCTCTCAAATTTCCATTGCTGCCAAACGCACCAGACGGGTCGCAAATACCCGCCAACAAGCTCAGGTTGTCCAACTTCCCAGCCCACCCCAAACAAAACTACGCAGACCTCTTCACAGGACCAAAACACCTCAGAGGAGAGCAAAGCAGTTGGCAGTAACAAAAAACGTATACGTTAGCTCGTCGGAGGAGTGCAGTGACTCTGAAGCCTCTATGGTGAATGTATTACTGGACTCTGACTCTGACCAATCAGATGAGACTCTATCTAAACTCAAATCTGAGATCCTCAGCTTCTTTCAGACCGCTTCTGCGGATGAGCTCACACTCATTGCAGGATGCTCTTTGAAGAAGGCTCAGAAAATCACCGAGCTGAGACCCTTTAAAAAGTGGGAAGACCTGAATGATGCCATGCACAGAGGAAATGGTCTTTCCACTGAGCTGCTGGCAGGATGTCGAGAGGTTCTAAAGGAAAGGGAAGTTGTTAAAGGTCTCATGAGCAAATGTGAAGAGATATCCGTAAAACTGATCCAAGATGTGACCCAAATGATGAACAATGGCCCGGGCTCTATGAGCCAGCCACAGATCCTCACCAGCACATTCCAGTTGAAACCGTACCAGCTGATTGGACTGAACTGGCTGGCTTTACTACATCAGAACAAACTTAGCGGAATCCTGGCAGATGAGATGGGTTTGGGGAAGACTATCCAGGCCATCTCGTTCCTGGCCTACCTCTATCAGGAAGGGAACCAAGGGCCTCATCTGATCACTGTTCCTGCTTCTACACTTGATAATTGGGTTCGGGAACTGAAACTTTGGTGCCCCAGTTTCAAAGTGCTGGTATATTATGGGTCTGCTGAGGATCGCAAGTATATGCGCTATGAGATTCTGAATCAAATAGTGGATTACAACATCATTGTCTCCACTTACAACCTGGCTATTGGAAATAACAGTGACCGCAGCCTGTTCTGCAAGCTCAAGCTGGAGTATGCCGTGTTCGACGAAGGCCACTTGCTGAAGAACATGAACTCGCTGCGCTACCGACACCTCATGGCCATCAACGCCAAATATCGTCTGCTGCTCACTGGAACCCCACTGCAAAACAACCTACTTGAGCTCATGTCCCTGCTCAACTTCATCATGCCCAGCATGTTCTCCAGCAGCACCTCACAGATCTCCAAGATGTTCTCCATGAAATCTTCAGAGGAGCAGAGCAGTTTTGAGAGGGACAGGATCACCCACGCCAAACTCATCATGAAACCCTTCATCCTCAGACGTGTGAAGAGCGAGGTCCTGAAGCAGCTGCCTGCCAAAGAGGAGCAGGTTGAATTTTGTGCCATGTCCGAGAGGCAGCAGGAACTCTACAATACTCTTTTCCACAAACTGAAGCGATCCAGTAATGGGGAAAAACGTGAGCTGACCAATGTCATGATGCAGCTGAGAAAGATGTCCAACCATCCGCTTCTTCACCGGCAGTATTATACCACAGAAAAACTCAAAGCCATGAGCAAACTCATGCTCAAGGAGCCAAGTCACCGTGATGCAGATCCCGCTCTCATCAAAGAGGACATGGAGGTGCTCTCAGACTTTGAGTTACACCACCTCTGTCAGCAGTATTCTGCACTGCAGGAATACCAACTCGACACAGACATACTGCTGGACTCGGGAAAGCTCAGCCTCCTCGCACAGCTGCTGAACTCCCTGAAGGAGAAGGGTGATCGAGTGGTGCTGTTTAGCCAGTTTACAATGATGCTTGACATTTTGGAGGTGTTCCTGAGACACCATAAGCACAGATACAACCGACTGGACGGTTCAACCCCCATGAGTGACAGAATTGGGCTGATTGACCAGTTCAACACAGACCAGGATATATTTGTGTTCCTGCTGTCCACTAGAGCCGGAGGGCTGGGCATTAACCTGACTTCAGCCAATGTGGTCATTCTTCACGATATCGACTGCAACCCTTACAATGACAAACAGGCAGAGGGCCGCTGCCACCGGGTGGGACAAACCAAGACGGTGAAGGTGATCAAGCTGATAAGTAAGGACTCCATAGAGGACGCCATGCTTCGAATTGGAGAAAGAAAACTCAAACTAGAGCAGGACATGACCGCAACTGCAACTGCAACTGAGGAGGATGAGGTCACAGTCAGTTTCCGGATGATAATTACCTCAGTCGTGGATCGACACAGTATCTTCACCTGTACAGAAAATTCCATGAGAATCTACTGAATTCCATGGCCCTGATTTAGCTACTGTACAGTGTGACTAAATAAA

Function

symbol description
smarcad1b Predicted to enable ATPase, acting on DNA; DNA binding activity; and chromatin binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and DNA double-strand break processing. Predicted to act upstream of or within DNA repair and chromatin organization. Predicted to be located in site of double-strand break. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in BASAN syndrome and adermatoglyphia. Orthologous to human SMARCAD1 (SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14439 SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_07218265_07232779.mRNA True 2909 mRNA 0.48 22 7218220 7232779

Neighbor

gene id symbol gene type direction distance location
CI01000304_07212382_07216898 SKA1 coding downstream 1322 7211830 ~ 7216898 (-)
CI01000304_07203008_07211715 NA coding downstream 6505 7202964 ~ 7211715 (-)
CI01000304_07183432_07198305 NT5C2L1 coding downstream 19915 7182622 ~ 7198305 (-)
CI01000304_07065444_07081535 GNAZ coding downstream 136250 7065219 ~ 7081970 (-)
CI01000304_07051182_07056250 NA coding downstream 161970 7051128 ~ 7056250 (-)
CI01000304_07282197_07285838 NA coding upstream 48702 7281481 ~ 7285838 (-)
CI01000304_07303509_07309222 STARD7 coding upstream 70045 7302824 ~ 7311711 (-)
CI01000304_07325899_07328203 NA coding upstream 92869 7325648 ~ 7328203 (-)
CI01000304_07464639_07466430 NA coding upstream 231456 7464235 ~ 7466430 (-)
CI01000304_07612069_07709665 NA coding upstream 379290 7612069 ~ 7709665 (-)
G422473 NA non-coding downstream 90197 7127412 ~ 7128023 (-)
G422469 NA non-coding downstream 95709 7122251 ~ 7122511 (-)
G422468 NA non-coding downstream 98203 7119731 ~ 7120017 (-)
G422466 NA non-coding downstream 105846 7112155 ~ 7112374 (-)
G422439 NA non-coding downstream 189715 6986869 ~ 7028505 (-)
G422512 NA non-coding upstream 44220 7276999 ~ 7277246 (-)
G422442 NA non-coding upstream 89244 7322023 ~ 7325559 (-)
G422521 NA non-coding upstream 106109 7338888 ~ 7340699 (-)
G422528 NA non-coding upstream 119885 7352664 ~ 7354386 (-)
G422536 NA non-coding upstream 135109 7367888 ~ 7368822 (-)
G422378 NA other downstream 435174 6744679 ~ 6783046 (-)
G422354 NA other downstream 586721 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 734725 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 2545273 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2953019 4263846 ~ 4265201 (-)
G422810 NA other upstream 397380 7630159 ~ 7652703 (-)
G423386 NA other upstream 1629444 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2335577 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 2503967 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 2920667 10160458 ~ 10163762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location