CI01000304_07989774_08014921 (IGSF9A)


Basic Information

Item Value
gene id CI01000304_07989774_08014921
gene name IGSF9A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7988902 ~ 8015304 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_07989774_08014921.mRNA
GTATATATAGTGACATGTCAAGCAGTGACACCAGTTTCCTGCAGTGTGACATGCATATTTTTATGGGTGGGTGCAGGACACTATAGTTCATTTATGTAAGTGAGGATAAGAAAATAAAGTAAACTGTGACATATTATACCCAAAAATTCTTCATACAGTGGACTACCAGTGAAATTGATAAAAATTTGGGACCAAAAATTCAGACACTTTGACCTGACCTTGTTTTGCTTAAGTGTTATCTGACATAATTAAGATAATTTTTTTCTGACACAGTTTAACTATGAGATCTTGTCATATTTTATTACCATTTTTTTAAACTATAGTGAATAAACTGTATTAATGAATGAAATGTTCAAGGTGTCTGAATAAATTTTGGTTTGACTGTATATATATATATAATTTTTTTTCAGTGGAATTACATTATAATGCAAATGTTTAATTTTGCATAGATAGGTAATAAACGATTGGTTGTTTCAGTAGTTACAGTGTATTTAATCACATTTATAGCTGGGAAGGAGTGTCCTCTCCTGAGCTGAAGGCATCACATGTCGTAATGGAAGTTTGAGTCATAAAGTATAAATCTAATTTTACAACCTTCCTTTATATAGTTTTTAAGTTTATACATGAATTAGTTCAATGCAGATATGTTGTTGAGATTATTGTGGTCATATATACAATACAATCCGTACATAATATCCCATAATCCTCCTGTGTGCTCTAAGATTACAGAAACAGGCAAAGCAAAAAAGGTGTGGATATGTTTGTGACATACTGTATAATATGCTTTCACTGTGGTTGAGTTTTGTTTGCCTGTTGCTTGATCTTGTATGTTTGATGTTCTGCAGGTATGTGAATCTGTATGAATACCCATCATGCTACTGAAGAACCTTCCTTTGTTGGAAGTCATTGTTGCAGTACTGTCCCTATTCATTCACACAAGTGCAGCTGAAGCTCACGTCCGTGCCAAGAAAGGGGACACTGCTGTGTTGACATGCAGTTTACAAGCCCCGGACAAGGGCAGCACTGCCCCTCAGCACGTCATAGAGTGGGTGCGTCAGGGCTACGATATCCCCATCCTCATGCACTTTGGAGTGAACAATCTTCGAGTGCATCCCAACTATGATGGTCGAGTGTCACTCATCAGAGGAACATCACTGCAGATCAGGGGGCTTCTCTTAGAAGACGAAGGCTGGTATGAGTGCCGAATCCTCCCACTAGACAAAACCACTGATGAGGCTGGAAGCAACGGGAGCTGGACTCTACTCTTTATTACAGCACCTCCTGTGCTTACGGAAACCTCACCTCCTGCCGTTGAGGTATTTGTAGGTAGATCAGTAACCCTGAAGTGTGCTGCCCAGGGAAATCCACGGCCTACAATAACCTGGTCTAAAGATGGAGGGCCAATAAAACCTCAAAACAAAGTAAAGATCATGAATGGAAGTGTATCTTTCCATGCTGTAAGCAGAGAAACATCAGGCCAGTATCAGTGTCACGCCTCCAACACTGAAGGAAATGTAACTCACATCACAAAGGTCAAAGTCATTGGCCCTCCGGTGATTGTAATTCCTCCAACCGACACTGTTCTCAACATGTCCCAGGATGCCAAGTTGAAGTGCCAGGCTGAGGCTGACCCACCAAACATGACCTATGTGTGGCAAAGACAAGGAGAAGACATTTACCACATTGAGTCTCTGAAGTCTCGTGTTAAGATCATAGTGGATGGTACACTACTTATATCGCGTTTGACTCCAGCGGATTCAGGGAACTACACCTGCATGCCTACTAATGGACTTCCTGTGTCCCCTTCTGCCTCAGCCATCCTCACTGTGCAGCACCCAGCACAGGTGGTGCAGATGCCCAAGCTGACCTTCCTTCCCACTGGCATGAGGGGTGTCATTGCGTGCCCCGTAAGAGCTGAACCACCATTATCACATGTAGACTGGATCAAAGATGGCAAACCGCTCGATTTAGACATGAGCATTATTTCCAAAAATTACTTTGTGAAATTCTTTCAACAGTATCCTGGATGGACACTGACCTCAGAAGGCTCTATCATCATAGCAACAGCTAATGATGACGCTGCAGGTGTATACACGTGTACTCCATACAATAGTTTTGGGACAATGGGCCAGTCTGAACCCACCATTGTTATACTACAGGATCCTCCGTCATTTAAAATGTCACCTCGTAAGGAGTACAGACAGGATGTGGGAAGGATACTTGTTATTCCATGTCAGATGGACGGTAACCCTGCTCCAAAAGTCAGCTGGAAAAAGGTTGGTACAGCCTCTCGCTCACTGTACACTCTAGCAGCGAATGGCTCGCTCATTCTACATCCTCTCAGTAAAGACCACCAGGGGGAGTGGGAGTGCAGCTCCACCAACCGAGTGGCTACTGTATCCGCCAGAACAACAGTCTTTGTGCTCGGTACAAGTCCTCATGCAGTGTCGTCAGTATCTGTGATCCCAGGAATTAACCAGGCCAATGTCTCCTGGGTGGCTGGCTTTGATGGAGGATATACCCAGAAATTCACTGTCTGGTATAAGCAGGTGTCAGCAGTAAGGATAGAGGAAAAGCAAGAGTGGTTGTCTTTCTCAGACCTCTCTACTGAGAATAGTCTGCTGGTCACCAATCTTCTTCCTGCCACTGCGTACCAGTTCAGTGTCATGGCCCAAAATAAAATTGGCACTGGGCCCTTCAGTGAGATCACGACCATCACAACTATGGATGCCCTTCCCATTGTGGCCAAGCTGGTACCCCCTATTAATCTCTCAATCAATAAGAGTTCAGAGGGAATTCTTCTGTGGTGGTCAGCACCCCGGTCCCAGTCTGTACCCATTGACAGTTTTGTCATACAGTCACGCCTTGAGGGAGAGGAATGGATTAATCTGAAAGAGGACATTAGCCCAGCTGAGAGTCAGATATTTCTTCCGGGGTTATGTAAGGACTGCAAGTATGAACTGAGGCTTCTTTCTCGGAATGGAGATCAGCTGAGCATGCCCAGTCCATCAATCAGTGTCTCCACCATTGGAATGAATATGCACCCAGGCAGTTCCCATCTCCTAGACTTTCCTGATAGGCTAATTGCTGGTGTCATGGGTGGAGTGGGACTCCTTTGCCTTGCTCTTATCCTGACTCTGGCAATAGTTTGTTTCATTTATCACAAAAGGGGACGAAGGCGCAGGCAGAATATCAAGGATCTCCCACCTGCAATAAAAAACAAACCATCTGTAAACAGCCCTGACAACACCCTGAAGCAAAGGCTCCTACCAGCTCATCCACTCTCCTACACTTCCTCCTCTTCCAATCACTCCTCCCTTGACAAGTCCACTCGCAGTGATTGTCATGCCCAGCGCCAACATCCTCTGCCTCAAGCTAACCCTCCATCCCACCATTCCCTCCCTGAAAGCCATCTCCAACGGGCATCGCTTGCCCCTGTGTCCTCTGTGGAGTTCATCCACCGAGGCCCTGATGGACGCTTTATTGCCCAGGCTTGTGAAGATGACAATGTTGTCAGTTCCCAGATTAAAAGAAACCCAAGTCAAAACTCGCATCGGGCATCAGATGGAAACAGAAGCTTCAGAATCCAGAAATCACAGTCTTTGAGATCCTACAGAGATGAAAGAAAAAAGCCACCCTTTGTCCTTTCAGTGGATCTTCCACCTTTCAGATCAGATATTCCTTCTTCCAGCAGAACACGAGCTATGGCTAAGCACCTTTCGTTGAATGGTCATTGCATGCCTATTCGGGAGCAAGAGTTCTTGAATGGACCAGACCAGACAAGTCTTTCGTCAGATGACAGTGGCTCTTTTCTATATCCCCATTCAGAAAGTACTCTGGGTCAACAGTCCCTGAAACAAGGTACCAACCACTCTGCAGCCAGTACCCTGGTTTTGCAGATGGAGCATGAGAGGGAACAAGGAAACCTAAGTCGCTGTTTGACTTTGGCTCGTGAGAGAGAGGAGCTTGAAAGGGAATTGCGCAAGTACACTGTTGATCGAAATCCACCTAGCCATGAGACAGATGATGAATATGGAAAAATCTGGAAAACTCAAGAAACTTCAACACCTCAGATTAACTACCAAGGCGTGAGACAAAGCCTTTTATCTGAGAATACCAGCATGTTGAAGGGAAGAGCTGCCTCTTGCATTCCATGGGAAGAAAGACACAGGATTTCCTCTGCAAGCCTGGTGCCCCTACATACAACTTATGGAAAGGATAGCAAATATAGGCAGAATCAACAAGGCTATCATTCCATTCAGAGATCCAACTACCAACGGTCTCGAAGTCTAGACAGAGCTGAACACAAAAAATCACAAACATGGGACCGAAGACGAAGTAGGACGCCTGTTGATTCAAGTCTTGGTCGTGTAATGGATGAACCTTTAACCTACAATTTGGAAAATACCCAAACTGCTGTAGGGCATAGAGCCCATAGGACCTCCAGCAGAAGTCAACATTATTTTGACCCATGTATTTTTTCATCTTTAGACGATCAGCAGGAGCAGGCTATAGAAAGAAGCACTAGACATATGAATCCAACTGCTGATTATTCAGAGATGAGTGTGGATGGACCTGATCTTGAGAGCCAGTCTCCATATACAAGATCCATACTGGGCTCGGGTCACAGTTATGAGACTCTAGACTATGACAGACCCAGGTTATCAGAGCTTGAAAAGGACAGATCAGAAGAGTCAGGACATGTGAGTACAAGAAAGCAGGAGAAGTTGAACAATTGGTCAAGAAAAACTGTGTCTTCAATGAATGTCTCTAGAACAATGCCTCGGAAGACAAAGAGTCTGGGGCCAAACAACTGGAATCGGAATGAGAGCATGCATAGTTTAGACTCTAAATTATACAAGGACCAGTTTTTGACCCCTGATGCCTGGGTAGATTCGCTGACACTTAGTCGAGATTCTACAATGTCTCCTTCTGCGTGCAGATCCAACTCTGTGGCAGATAAACCTAAAAGTAATCCCAATTTGCAAACAGATTTATCTGTGCCTTCAGAAAGTCAAATGCGAGACCACCATCATCAGGCCTCTAAATCCCATGATGGCTCTACCAATGACTCAAAATCCAGCAAAAACCTAGTATCAGGACATAATACCAATACTGCCTTATTATCACCAGGGGGTTCTAGCTGGCCTCTGACTTATTGCCCCTCTCTGTCAGCCTTGCCATCTGGAAGCCAAAGCCAAGTGGTGGAGAGAGAGGAGGAAGACGAAAATGTGCAGGAGGTGGATGTGGAAATTAACAGATATAGGAAGAGCTCAGAGACGGAGGGAAGTTATAGGAGTTATGCAAGCCAAAGCAGTGGCAGAGGCAGCATGGATGCCCCTAACAGCAGGCAGTTGTCTCTTAGCCCCCCTCTCACCAGCTCACCAGAGACCACAGAGGACAGTGACAGAGATGAGGCAGCTCTACAGGAGCCTGAAAAGCATGAAAGAAGAGGCTCTGTGGATGAAAGTTATGAGTGGGAGAGTTATGACTCTGCTTACGTCCAAATGCATCCTGTGGACCTCAAAGTGTCAATGAGCAAGGAAGGTCTACGAAGAGATCTCCTGAGTCAAAGGAAGCAGGGCAGATCTACCAAAGATAATGGCAGGCCAGATTTAGACTTGAAACCTAAAGATCTTTACCCTCTGGCTGGTTTGAAGGAATCTGTACCACTCTTTGAACTTCCCAGTATTCTTCCTCCAAACTGTGAGCAAGAATCACTCCTGGCTCAGGAAATTCAGAAGAGCTTCACATCATTCCCAGACCCAGAGCCTGACACTGTGCTTTTCTGATTACTAACAGTAGGTACACCATTCATGCTGATCAGCCTGCACTGTTTTCATTTTAGCACTTACACTCATAGTCAGAAATTGTGTTGATGCACTTAAGATGATTAGATTTGTTTATCAAAACCAGCCAAAATGTTTTTATGTTCTCAAATCTAGATTGGATACAGCATGTTTCCCCTCAACACAGATCTGTATGGTCAAGATAAGAGGAGACACTGGGTGTCACCATTAATTGGATGTCTCAGGACCACTCAAGCACACTTGGAACCTAAGAACATACTCTGCCCAACTAATGGAAATGACATTATCTGATGGATGGACCAAGGCACAGCGAAGATAACTGTAGTCTAAAGAGCTTACATAATATGTGCTGGATCAAAGGGAGA

Function

symbol description
igsf9a Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Orthologous to human IGSF9 (immunoglobulin superfamily member 9).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_07989774_08014921.mRNA True 6175 mRNA 0.45 20 7988902 8015304

Neighbor

gene id symbol gene type direction distance location
CI01000304_07979388_07979919 TMEM230, TMEM230A coding upstream 8182 7979078 ~ 7980735 (+)
CI01000304_07927790_07957821 DPYSL2A, DPYSL2B, DPYSL2 coding upstream 30440 7927790 ~ 7958462 (+)
CI01000304_07909498_07914625 BNIP3LB coding upstream 72960 7909498 ~ 7915942 (+)
CI01000304_07890347_07902088 PPP2R2AB, PPP2R2A coding upstream 86144 7890347 ~ 7902758 (+)
CI01000304_07436662_07442126 PRKAB1A, PRKAB1 coding upstream 546210 7436662 ~ 7442692 (+)
CI01000304_08120416_08124549 LRRTM4L1 coding downstream 105112 8120416 ~ 8124597 (+)
CI01000304_08222591_08229908 NA coding downstream 207287 8222591 ~ 8230947 (+)
CI01000304_08232073_08235598 NA coding downstream 215989 8231293 ~ 8235655 (+)
CI01000304_08547909_08562342 XPO7 coding downstream 532605 8547909 ~ 8562604 (+)
CI01000304_08582404_08594691 DMTN coding downstream 567100 8582404 ~ 8594884 (+)
G422783 NA non-coding upstream 13499 7975175 ~ 7975403 (+)
G422782 NA non-coding upstream 13854 7974837 ~ 7975048 (+)
G422781 NA non-coding upstream 14910 7973792 ~ 7973992 (+)
G422780 NA non-coding upstream 16169 7972528 ~ 7972733 (+)
G422779 NA non-coding upstream 17539 7971137 ~ 7971363 (+)
G422795 NA non-coding downstream 11554 8026858 ~ 8027123 (+)
G422803 NA non-coding downstream 24508 8039812 ~ 8040230 (+)
G422966 NA non-coding downstream 49354 8064658 ~ 8065423 (+)
G422972 NA non-coding downstream 53758 8069062 ~ 8069399 (+)
G423041 NA non-coding downstream 132767 8148071 ~ 8148440 (+)
G421435 NA other upstream 504214 7484141 ~ 7484688 (+)
CI01000304_07352697_07354032 NA other upstream 634570 7352621 ~ 7354396 (+)
G421162 NA other upstream 1745905 6241233 ~ 6242997 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 2812111 5173426 ~ 5176791 (+)
CI01000304_08671901_08672203 NA other downstream 656466 8671770 ~ 8672555 (+)
G423614 NA other downstream 933732 8949036 ~ 8949422 (+)
CI01000304_09564068_09565679 HRH2B other downstream 1549301 9561005 ~ 9565778 (+)
G424246 NA other downstream 2105095 10116343 ~ 10127322 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location