CI01000304_08120416_08124549 (LRRTM4L1)


Basic Information

Item Value
gene id CI01000304_08120416_08124549
gene name LRRTM4L1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8120416 ~ 8124597 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_08120416_08124549.mRNA
GTCCTGTTGCTTGTGACAAGAGATTAGCAGGCCTCCTCCTCCTCCAAGCCTCCTCCCTGCTGCTGTTCAGTTCTGGGGAAAGGATGTGCCCCTATAGCTGTCGCTGCGAGGGAAAAATTGTCCATTGTGAGTCAGCTGGCTTCCAGGATGTCCCAGAAAATATTTCAATTAGTTGCCAAGGTCTATCCCTACGCTACAATGACCTGCACACAATGCTCCCCTACCAGTTTGCCCATCTTAACCAGCTACTGTGGCTGTATCTGGACCACAATCAAATCACATTTGTGGATAGTCGTGCTTTTCAGGGTGTGCGGCGATTGAAGGAGTTGATCTTAAGCTCCAATAGGATTTCACAGCTCCATAATGTAACTTTTCATGGAGTACCTAACCTTCGCAGTCTCGATCTCTCCTACAACAAGTTGCAGGAGCTGCAGCCAGGCCAGTTTTATGGTCTTCGAAAACTGCAGAATCTGCACTTGCGCTCCAACGGACTTACGACAATCCCTGTTCGGGCCTTTCTGGAGTGCAGAAGCTTGGAGTTTCTAGACTTGGGCTATAATCGGCTTCGGGTTCTAACTCGCACGGCATTCCTGGGTTTATCTCGGCTTATGGAACTCCACTTGGAGCATAACCAGTTTTCACGAATCAACTTCTTTCTCTTTCCTCGCCTTGCTAACCTTCGTGCCCTGTACCTGCAGTGGAATCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTACACCTTACAGAAGCTTGATATCTCTGGCAATGAGATACAGGTACTAGATCCTGTAGTATTTCAATGCCTTCCCAATCTTCAGGTTCTCAACTTAGAGTCTAACAAACTGGCCAATGTGTCTCAGGAAGTTGTGGCTGCCTGGATCTCCCTAACAACCATTAGCCTTGCAGGCAACATGTGGGATTGTGGGCCAGGCATTTGCCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAGTATAATCTGCAGCAGTCCCAAGCACCTTCAAGGGGAAAAGGTCATGGAGGCTTCAAGGAGCTTCATTGACTGTGATGACTATGAAATTACTGCTCAGTCACCTTTGTATCTGCAGACCTTTGATCCGAATTTTGACCTTACCCCTGAACCAACTGATTCGACAATGGCTCCTACAACACCGCCTCCACCCCTGCCTTCACCTGCCTCTGAGGCGCCCGTTCCTCCTCCACACCCTAGACCAGCTCAACGGCCCACCTTTCCCAGCCATGCAAATATAGATCCCAGAGACTCCCGTCAATGGACTCCCTCATCTTCCGACAGCTTATCAGTGACACCAGCTCCTGAGCAAGACAATGTGTCTTTTCACAAAGTGGTAATGGGTGGCGTGGCACTGTTCCTCTCAGTGTCCCTTGTCCTGTCGGTAATTTATGTCTCCTGGAAACGTTATCCCGGTGCCACCCGGCTATTGCAGCAGAGTTCAGTGGGCCGAAAGCGAAGGAAAAAGAGTCAGGAGCCAGAGCAGAACCTGAGCTCCCAGCTTCAGGAATATTACATGAGCTACAACCCCGCAGCCACGCCAGAAGCTTTGGAGGTGCTGGGAAATGGGACAGGTACCTGCACCTGCACCATATCCGGCTCCCGGGAATGTGAGGTGACATATTTCTACATCTACACTTTTAACATTCTTCACCTTTGAGTTTATATCACTGTGAAATACAAACTCTCAACTTTATGCATGCCTGCA

Function

symbol description
lrrtm4l1 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain; central nervous system; and retina. Orthologous to human LRRTM4 (leucine rich repeat transmembrane neuronal 4).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_08120416_08124549.mRNA True 1739 mRNA 0.50 2 8120416 8124597

Neighbor

gene id symbol gene type direction distance location
CI01000304_07989774_08014921 IGSF9A coding upstream 105112 7988902 ~ 8015304 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A coding upstream 139696 7979078 ~ 7980735 (+)
CI01000304_07927790_07957821 DPYSL2A, DPYSL2B, DPYSL2 coding upstream 161954 7927790 ~ 7958462 (+)
CI01000304_07909498_07914625 BNIP3LB coding upstream 204474 7909498 ~ 7915942 (+)
CI01000304_07890347_07902088 PPP2R2AB, PPP2R2A coding upstream 217658 7890347 ~ 7902758 (+)
CI01000304_08222591_08229908 NA coding downstream 97994 8222591 ~ 8230947 (+)
CI01000304_08232073_08235598 NA coding downstream 106696 8231293 ~ 8235655 (+)
CI01000304_08547909_08562342 XPO7 coding downstream 423312 8547909 ~ 8562604 (+)
CI01000304_08582404_08594691 DMTN coding downstream 457807 8582404 ~ 8594884 (+)
CI01000304_08624038_08653167 PPP3CCA, PPP3CCB, PPP3CC, PP2BC coding downstream 499441 8624038 ~ 8653550 (+)
G422972 NA non-coding upstream 51017 8069062 ~ 8069399 (+)
G422966 NA non-coding upstream 54993 8064658 ~ 8065423 (+)
G422803 NA non-coding upstream 80186 8039812 ~ 8040230 (+)
G422795 NA non-coding upstream 93293 8026858 ~ 8027123 (+)
G422783 NA non-coding upstream 145013 7975175 ~ 7975403 (+)
G423041 NA non-coding downstream 23474 8148071 ~ 8148440 (+)
G423043 NA non-coding downstream 26205 8150802 ~ 8151170 (+)
G423046 NA non-coding downstream 28260 8152857 ~ 8153236 (+)
G423020 NA non-coding downstream 35958 8160555 ~ 8161691 (+)
G423011 NA non-coding downstream 95017 8219614 ~ 8220183 (+)
G421435 NA other upstream 635728 7484141 ~ 7484688 (+)
CI01000304_07352697_07354032 NA other upstream 766084 7352621 ~ 7354396 (+)
G421162 NA other upstream 1877419 6241233 ~ 6242997 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 2943625 5173426 ~ 5176791 (+)
CI01000304_08671901_08672203 NA other downstream 547173 8671770 ~ 8672555 (+)
G423614 NA other downstream 824439 8949036 ~ 8949422 (+)
CI01000304_09564068_09565679 HRH2B other downstream 1440008 9561005 ~ 9565778 (+)
G424246 NA other downstream 1995802 10116343 ~ 10127322 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002051 lrrtm4l1 coding NC_007121.7 CM002894.2 19310688 ~ 19394491 (+)