CI01000304_08547909_08562342 (XPO7)


Basic Information

Item Value
gene id CI01000304_08547909_08562342
gene name XPO7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8547909 ~ 8562604 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_08547909_08562342.mRNA
AGCCTAGCCCAGCTAGAGATCCTGTGCAAGCAGCTATATGAGACCACAGACACCACCACACGTCTACAGGCCGAGAAAGCTCTGGTGGAGTTCACCAACAGTCCGGACTGCCTGAGTAAATGCCAGTTGTTGCTGGAAAGAGGAAGTTCCTCATACTCGCAGTTGTTGGCTGCAACGTGTCTCTCCAAGTTGGTGTCTCGTACAAGCAATCCACTTCCCCTGGAGCAGCGCATTGACATTCGAAATTATGTTCTCAATTATCTGGCAACTCGGCCAAAGCTTGCTGCCTTTGTGACACAAGCCCTGATCCAGCTCTATGCCAGAATCACCAAGCTTGGCTGGTTCGACTGCCAAAAGGAAGATTACGTCTTCAGGAATGTCATAGTCGATGTGACGAGATTCCTACAGGATAGTGTTGAACACTGCATCATAGGAGTCACAATTCTTTCCCAGTTAACCAATGAGATTAACCAAGCAGACTCATCGCATCCACTTACAAAACACAGGAAGATTGCATCATCATTTCGAGATTCCTCTTTGTTTGATATCTTCACCCTCTCCTGCAACCTCCTCAAGCAGGCATCTGGGAAGAACTTGAATCTAAACGATGAAAGCCAGCATGGGCTGCTCATGCAGCTACTCAAACTGGCCCACAATTGCCTCAATTTTGATTTCATCGGTACATCCACTGATGAGTCTTCAGATGATCTGTGCACCGTCCAGATCCCCACCAGCTGGAGATCAGCCTTTTTGGATTCCTCAACCTTGCAGCTGTTTTTTGATTTGTATCATTCCATCCCTCCTTCGCTGTCTCCCTTGGTTTTGTCTTGTCTAGTCCAAATAGCATCTGTCAGAAGGTCTCTCTTCAACAATGCAGAGAGAGCAAAGTTCCTCTCCCATTTAGTTGATGGTGTGAAGAGGATATTGGAGAACCCTCAAAGTTTGTCGGACCCAAACAACTACCATGAGTTCTGCCGACTGCTGGCTCGACTCAAGAGTAACTATCAACTGGGAGAGCTGGTTAAAGTAGAGAACTACCCCGAGGTCATAAGACTGATCGCTAACTTCACAGTAACTAGTCTTCAGCACTGGGAGTTTGCCCCCAACAGCGTGCACTATCTGCTGAGCCTGTGGCAGCGTTTGGCGGCATCTGTCCCTTATGTGAAGGCCACGGAGCCCCACATGCTGGAGACCTACACCCCTGAGGTGACTAAAGCGTACATCACGTCTCGCCTGGAGTCCGTGCACATCATTTTGAGAGATGGTCTTGAAGATCCCTTGGATGATGCCGGCTTGGTGCAACAGCAGCTGGACCAGCTGTCTACTATCGGGCGGTGCGAGTATGAGAAGACCTGTGCCCTACTGGTCCAGCTCTTCGATCAGTCGGCCCAGTCATACCAGGAGCTGCTGCAGTCCACCAACTCCAGCACAATGGACATAGCAGTCCAAGAGGGTCGTTTGACGTGGCTGGTGTACATCATTGGTGCAGTCATTGGAGGAAGAGTATCGTTCGCCAGCACGGATGAGCAAGACGCCATGGATGGGGAGCTTGTGTGTCGAGTTTTGCAGTTAATGAACCTCACAGACTCACGGCTGGCTCAAGCAGGAAACGAGAAGCTCGAGTTAGCCATGCTCAGTTTCTTCGAACAGTTTCGGAAAATCTACATCGGTGACCAGGTGCAAAAATCATCAAAGTTATATCGGCGACTATCAGAGGTTCTTGGCCTGAATGATGAGACCATGGTACTCAGTGTTTTCATTGGGAAAATCAGTGTTAGAAAACTAGTGAAACTTAGTGCTGTCCAGTTCATGCTAAACAACCACACAAGTGAGCACTTTTCTTTCCTGGGCGTAAACAATCAGGCCAATCTTAGTGATATGAGGTGTCGGACCACTTTCTACACAGCCTTGGGAAGACTTCTTATGGTAGATTTGGGTGAGGATGAGGACCAGTTTGAACAGTTCATGCTTCCTCTCACTGCCGCGTTTGAAGCCGTTGCTCAGATGTTTAGCACCAACACCTTCAATGAACAAGAAGCAAAAAGGGCAATAGAGCTCTGGTACCATGTACCTGCCTGCACCACACCGGTCCTCAAACTCATGGCTGAGCTCGTCCACAACAGGGAGACTAGCAAGATGATTACAACATATGGAAATCGGATCCTGACACTGGGTGAGGTGCCAAAAGATCAGGTTTATGCACTGAAATTGAAAGGAATCTCCATTTGTTTCTCCATGCTGAAAGCCGTATTAAGCGGCAACTATGTCAACTTTGGCGTCTTCCGTCTGTACGGCGATGATGCCTTGGACAACGCCCTGCAGACCTTTATTAAGCTGCTCTTGTCCATCCCTCACAGTGACCTGCTGGACTATCCAAAGCTTAGTCAGTCTTACTACTCTCTTCTGGAGGTGCTAACCCAAGACCATATGAACTTCATCGCCAGCCTGGAGCCTCATGTGGTCATGTACATCCTGTCCTCCATATCAGAGGGGCTTACTGCACTTGACACAATGGTATGCACTGGTTGCTGCTCAAGCCTGGATCACATAGTTACTTATCTATTCAAGCAGCTTTCACGCAGCACAAAGAAAAGAGCGGCGCCCATGGCCCAGGAGAGTGACCGCTTCCTTCACATAATGCAGCAGCACCCTGAGATGATTCAGCAGATGCTGTCCACAGTGTTGAATATCATCATTTTTGAAGATTGTAGGAATCAGTGGTCAATGTCACGGCCACTGCTTGGTTTGATTCTGCTCAATGAGAAGTATTTTGCAGATTTGAGGAACAGCATTGTGAACAGCCAACCACCAGAAAAGCAGCAAGCCATGCACTTATGCTTTGAAAATCTCATGGAGGGCATAGAGCGAAACTTGCTCACCAAAAACAGAGACAGGTCATTTGATTTCATATGATTTTTTTTTATGCTGTTTTGTGTTTAAGTTTACAGAGAAATACTAAACCATAATATAGATCCTTTAAAATATAAATTAAGCTCTCAAGCGCACATATAAAGCTTGCCACAGTGCACTGGCAAAAGTAATGATTATGAATGTAATTTTAATAAACTAGTGCTTTGAGTCAGTGTAAAAAATGTAAAGATGAAGTTGACGGACGCTGACTCGTCATCTCCGCATTATAGTGGATGCGCCTATTAAGAGAAATGTTAACGTTAAA

Function

symbol description
xpo7 Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within intracellular protein transport and nuclear transport. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Is expressed in heart. Orthologous to human XPO7 (exportin 7).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18460 XPO7, EXP7; exportin-7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_08547909_08562342.mRNA True 3175 mRNA 0.47 24 8547909 8562604

Neighbor

gene id symbol gene type direction distance location
CI01000304_08232073_08235598 NA coding upstream 312254 8231293 ~ 8235655 (+)
CI01000304_08222591_08229908 NA coding upstream 316962 8222591 ~ 8230947 (+)
CI01000304_08120416_08124549 LRRTM4L1 coding upstream 423312 8120416 ~ 8124597 (+)
CI01000304_07989774_08014921 IGSF9A coding upstream 532605 7988902 ~ 8015304 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A coding upstream 567189 7979078 ~ 7980735 (+)
CI01000304_08582404_08594691 DMTN coding downstream 19800 8582404 ~ 8594884 (+)
CI01000304_08624038_08653167 PPP3CCA, PPP3CCB, PPP3CC, PP2BC coding downstream 61434 8624038 ~ 8653550 (+)
CI01000304_08671901_08672203 NA coding downstream 109200 8671770 ~ 8672555 (+)
CI01000304_08741397_08752689 NA coding downstream 178793 8741397 ~ 8752689 (+)
CI01000304_08864119_08871322 LETM2 coding downstream 301173 8863777 ~ 8871689 (+)
G423252 NA non-coding upstream 5232 8542430 ~ 8542677 (+)
G423234 NA non-coding upstream 11043 8483902 ~ 8536866 (+)
G423243 NA non-coding upstream 25342 8521550 ~ 8522567 (+)
G423242 NA non-coding upstream 33652 8513906 ~ 8514257 (+)
G423202 NA non-coding upstream 70834 8476837 ~ 8477075 (+)
G423254 NA non-coding downstream 36113 8598717 ~ 8599084 (+)
G423256 NA non-coding downstream 37845 8600449 ~ 8600652 (+)
G423315 NA non-coding downstream 299277 8861881 ~ 8862095 (+)
G423310 NA non-coding downstream 335378 8897982 ~ 8908476 (+)
G423318 NA non-coding downstream 341907 8904511 ~ 8905000 (+)
G421435 NA other upstream 1063221 7484141 ~ 7484688 (+)
CI01000304_07352697_07354032 NA other upstream 1193577 7352621 ~ 7354396 (+)
G421162 NA other upstream 2304912 6241233 ~ 6242997 (+)
G423614 NA other downstream 386432 8949036 ~ 8949422 (+)
CI01000304_09564068_09565679 HRH2B other downstream 1002001 9561005 ~ 9565778 (+)
G424246 NA other downstream 1557795 10116343 ~ 10127322 (+)
G424251 NA other downstream 1626218 10188822 ~ 10189404 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020982 xpo7,LOC107586117,LOC107678024 coding CM030127.1 CM030127.1 40229942 ~ 40269290 (+)