CI01000304_08754563_08783858 (LOXL2A, LOXL2)



Basic Information


Item Value
gene id CI01000304_08754563_08783858
gene name LOXL2A, LOXL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8753993 ~ 8783858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000304_08754563_08783858.mRNA
ACTCTGTAATGAAGTCATGCGCTTACAAGTCTTTCTGTGACAAGTCTCACATGAGCAATGGTGAGGTGAAGCTGGAATGCTGCTTCAACGACGACTGTAACGGCCCCCACCGGTCCCACAGCCATGGAGAACACAACACCGCCATGACCCTGAGCTCCAGCCCTGTCCTGCTGCTGGGAGTCCTGCTCATTAGACTGGCTGATACAGACAGAATCAGCGCTGCTGCATCCAGCTGCGGGTGTAACTTGGCAAGAGTTTCCTCACAAGAACAAGTTTTTCCAAAGTTTGGGATGAGTGATGGTAAAGGTCTCTGTGGAAGTTTAGCCATGGCGGTCTCTTCTACATTGTACATCTTCAGTCTGTTGGTCCTGGTTCAGGCCCAATCTGAATCCCAGCAACCCCAGATTCAACTCCGCCTTGCCGGTGATAAACGCAAGCATTATGAGGGTCGTCTAGAGGTCTTCTACAACAATGAATGGGGGACTGTCTGTGATGATGACTTCTCAATCGAAGCGGCTCATGTTGCGTGTAGGCAGCTTGGATTTCTGGGTGCTGTGGCTTGGTCCCCATCTGCAAAGTTCGGACAAGGAGAAGGTCGCATTTGGCTAGACAATGTCCATTGCACAGGAAGAGAAAAATCTTTAGCCGAATGCTCCTCGAATGGCTTTGGGGTGTCGGACTGCAGGCACAGCGAGGATGTTGGGGTGATGTGCAATCAGAAGCGCATCCCTGGCCACCGGTTCATAAATGCCATGAACAACAATGTTGAGTGGAACAGAAGAACAGCTTATCGTAATCAAATGAATCACCACCACACACAATCTGCCACAGCACATGGAAACAATCGGGGATCCACAGAATGGTTAACTAAAGTGTCTTTGTCCACAAACTGTTTAGAGCTGCTCCTGGTTTGTGAAAAACCACCCTTGTGGGAAGAAGACATACCGCTGTATATGAGCTGTCAGACAGCATTTACAATCTCAAAGACCTCTTTGTCGGGTCTTATTACTACCAAAAAACTACGTCATGAAGGGAAGACTCTTGAAGAACGGGTGGAAGAAATCCGTATAAGACCCATATCATCCCATATCAAGCGCATACCCATCACAGAAGGCTTTGTGGAGCTGAAGGACCGGGGCAAATGGAGGCAGATCTGCAATGAGGAGTGGACCCCCTTGAACAGCCGAGTCGTCTGTGGAATGTACGGATTTCCCGGAGAGAAGAACTACAACAACAAAGTCTACAAGTCACTGTCTATGCGTAAGAGAAAGAACTACTGGGGTTTTTCAGTGAACTGCACAGGAAATGAAGCTCACCTATCCAGCTGTAAATTGGGCAAACCCCTGGAGCCCAAGAGGAACGGCACTTGTGGACGTGGTCTGCCTGTGGTGGTCAGCTGTGTTCCTGGAAGAGCTTTTGCCCCCTCATCCTCCATTGGCTTCCGCAAGGCCTACAGACCAGAGCAACCCCTGGTTCGTCTGCGGGGAGGTGCTAATATCGGTGAAGGGCGAGTGGAGGTGCTGAAGAATGGTGTTTGGGGAACGGTCTGTGACGATAACTGGAACCTGAGGGCCGCTACCATTGTGTGTCGAGAGCTGGGCTTCGGAAGCGCCAAGGAGGCTCTCACTGGAGCAAAGTTAGGACAAGGAATGGGTCCAGTCCACATGAACGAGGTGGAGTGCTCTGGATTTGAGAAATCTCTCACTGACTGCTACTTCAATAATGATGCACTGGGCTGCAGTCATGAGGAAGACGCTGGCGTACGCTGCAATGTACCTGCCATGGGTTTCCAGAAGAGGATACGCCTAAGCGGAGGAAGAAACCCCTTTGAGGGACGTGTAGAAGTTCTCGCCGAGAAGAACGGTTCTCTGGTTTGGGGAACTGTTTGTAGTGAAAACTGGGGGATTATAGAGGCCATGGTGGTCTGCAGACAGCTGGGATTAGGCTTCGCCAGCCATGCGTTTCAGGAGACATGGTACTGGGCTGGAGATGCAAATGCAGATAACGTTGTGATGAGTGGGGTCAGATGCTCAGGAACTGAGATGAGTCTTCCTCAGTGTCTTCATCACGGGAAACACATCAACTGCCCGAAAGGAGGAGGACGCTTCGCCGCTGGGGTCTCCTGCTCTGATACGGCTCCTGACCTGGTGCTAAACGCTCAGCTGGTCGAGCAGACCACCTATCTGGAGGACCGGCCCATGTACGCTCTACAGTGCGCCCTAGAGGAGAACTGCCTGTCCAGCACGGCGAAAAAGAATGACCATAGCTCCTACCGCCGCCTTCTCCGCTTCTCCTCCCAGATCCACAACGTTGGCCAAGCTGACTTCAGACCCAAAATGGGTTACCATGCCTGGACCTGGCACGAGCATTATCACAGCATAGAGGTTTTTACACATTATGACCTGCTGAGTCTGAACGGCACTAAGGTGGCAGAGGGTCACAAGGCCAGTTTCTGTCTAGAGGACACCCAGTGTGACGAAGGTATTCAGAAACGGTATGCTTGTGCCAACTTTGGTGAACAGGGCATCACCGTTGGCTGCTGGGACACCTACAGACATGACATTGATTGTCAGTGGATCGATATCACAGATGTGAAACCAGGAGACTATATTTTCCAGGTCGTAATCAATCCTAACTATGACGTAGCCGAATCGGATTATACCAACAATGTCATGAAGTGCAAGTGTCGCTATGATGGATACAGGATATGGGCGTACAACTGTCATATAGGTGAGTTGGTTAGAAAAATACTGTATTGCAGGTGGCTCGCGGAGTTCAGACATGGACGAATACCCTGGAATGAGCAACCAGTTGCACTTCAGATAGAGGACAGCGAGGAACAAAGGCTCTCAGTGGAGGATGCTGCAGGCTGTCACTCAAGACTCTTCAAACATGACTGACCACTAGAGAGACTCCAGCACTTCAAAAGGCAGAGCCCGCTGCTCTGTTAACCGACCTCCAAATATAGACGCTATCGTTAGGTTGAAGTACAGCTCGTTTCACGGTCCTCGCTATATCAAGCTGGCTTTGTACAGAAATTATTTAAATTCCTTAAATGTACTGTACTTATTGCATTTATGTGTTTGAACTGCTAGTTAATCACTGTAGTGGTTACAAACTCATGCTTTAATGTTCAAGCTTGGATCTTCGTTTTGATTCTTTCTGCATTACAACTTAAAATGTCGCAAAGCCTGCAGTATCATGAACCCAACCTCACTTGCAGCCATCAGACTCTTTTGTGGCTCATTCTTCAAGCATGTCAAGTAATTTATTGTGTTCAGTCAGGGATTATATTTTGTCAACTTTTGTGTATGCAATGTGAAACTGTAAGAATTTGTTTCAAATTTGTGAAGCATCTACCCTCCGTTTTACGAGGGTACCTATGACCAGTTCAGTGGTTTCCAGGTATATAATGTGTTTATGACTGAACAACACATTTGGTCAAACCATTGCACTGTTTCTATAATAAA

Function


symbol description
loxl2a Predicted to enable calcium ion binding activity; copper ion binding activity; and protein-lysine 6-oxidase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in several cellular components, including basement membrane; chromatin; and endoplasmic reticulum. Predicted to be active in extracellular space. Is expressed in eye; intersegmental vessel; midbrain; midbrain hindbrain boundary; and notochord. Orthologous to human LOXL2 (lysyl oxidase like 2).
loxl2 Enables metal ion binding activity; oligosaccharide binding activity; and protein-lysine 6-oxidase activity. Involved in several processes, including collagen fibril organization; peptidyl-lysine oxidation; and response to copper ion. Located in several cellular components, including chromatin; endoplasmic reticulum; and nucleoplasm. Colocalizes with collagen-containing extracellular matrix.

NR:

description
Zgc:158414

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000304_08754563_08783858.mRNA True 3470 mRNA 0.49 19 8753993 8783858

Neighbor


gene id symbol gene type direction distance location
CI01000304_08727439_08731885 NA coding downstream 21876 8727316 ~ 8732117 (-)
CI01000304_08692093_08712203 NA coding downstream 41790 8691959 ~ 8712203 (-)
CI01000304_08680653_08681838 NA coding downstream 71604 8680131 ~ 8682389 (-)
CI01000304_08605819_08615439 HTR7B coding downstream 136026 8604875 ~ 8617967 (-)
CI01000304_08567281_08570808 PBDC1 coding downstream 183185 8567194 ~ 8570808 (-)
CI01000304_08789401_08798907 TACC1 coding upstream 5370 8789228 ~ 8799033 (-)
CI01000304_08819813_08827793 DDHD2 coding upstream 35090 8818948 ~ 8827793 (-)
CI01000304_08829163_08833955 PLPP5 coding upstream 44927 8828785 ~ 8833955 (-)
CI01000304_08836330_08859572 WHSC1L1 coding upstream 52024 8835882 ~ 8860729 (-)
CI01000304_08899490_08900383 NA coding upstream 115303 8899161 ~ 8900772 (-)
G423589 NA non-coding downstream 80981 8672676 ~ 8673012 (-)
G423588 NA non-coding downstream 81413 8671798 ~ 8672580 (-)
G423557 NA non-coding downstream 211307 8542460 ~ 8542686 (-)
G423551 NA non-coding downstream 239752 8513906 ~ 8514241 (-)
G423529 NA non-coding downstream 275329 8478182 ~ 8478664 (-)
G423615 NA non-coding upstream 165186 8949044 ~ 8949311 (-)
G423960 NA non-coding upstream 223750 9007608 ~ 9008693 (-)
G423972 NA non-coding upstream 253755 9037613 ~ 9098217 (-)
G424004 NA non-coding upstream 377944 9161802 ~ 9162014 (-)
G424006 NA non-coding upstream 380660 9164518 ~ 9164832 (-)
G422810 NA other downstream 1101290 7630159 ~ 7652703 (-)
G422378 NA other downstream 1970947 6744679 ~ 6783046 (-)
G422354 NA other downstream 2122494 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 2270498 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 4081046 4661766 ~ 4672947 (-)
G423386 NA other upstream 78365 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 784498 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 952888 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 1369588 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 1406716 10190574 ~ 10192357 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002713 loxl2a coding NC_007121.7 CM002894.2 20407888 ~ 20445549 (-)