Item | Value |
---|---|
gene id | CI01000304_08754563_08783858 |
gene name | LOXL2A, LOXL2 |
gene type | coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000304 |
NCBI id | null |
chromosome length | 18613800 |
location | 8753993 ~ 8783858 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
loxl2a | Predicted to enable calcium ion binding activity; copper ion binding activity; and protein-lysine 6-oxidase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in several cellular components, including basement membrane; chromatin; and endoplasmic reticulum. Predicted to be active in extracellular space. Is expressed in eye; intersegmental vessel; midbrain; midbrain hindbrain boundary; and notochord. Orthologous to human LOXL2 (lysyl oxidase like 2). |
loxl2 | Enables metal ion binding activity; oligosaccharide binding activity; and protein-lysine 6-oxidase activity. Involved in several processes, including collagen fibril organization; peptidyl-lysine oxidation; and response to copper ion. Located in several cellular components, including chromatin; endoplasmic reticulum; and nucleoplasm. Colocalizes with collagen-containing extracellular matrix. |
description |
---|
Zgc:158414 |
id | name | namespace |
---|---|---|
GO:0002040 | sprouting angiogenesis | biological_process |
id | description |
---|---|
K00280 | LOXL2_3_4; lysyl oxidase-like protein 2/3/4 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000304_08754563_08783858.mRNA | True | 3470 | mRNA | 0.49 | 19 | 8753993 | 8783858 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000304_08727439_08731885 | NA | coding | downstream | 21876 | 8727316 ~ 8732117 (-) |
CI01000304_08692093_08712203 | NA | coding | downstream | 41790 | 8691959 ~ 8712203 (-) |
CI01000304_08680653_08681838 | NA | coding | downstream | 71604 | 8680131 ~ 8682389 (-) |
CI01000304_08605819_08615439 | HTR7B | coding | downstream | 136026 | 8604875 ~ 8617967 (-) |
CI01000304_08567281_08570808 | PBDC1 | coding | downstream | 183185 | 8567194 ~ 8570808 (-) |
CI01000304_08789401_08798907 | TACC1 | coding | upstream | 5370 | 8789228 ~ 8799033 (-) |
CI01000304_08819813_08827793 | DDHD2 | coding | upstream | 35090 | 8818948 ~ 8827793 (-) |
CI01000304_08829163_08833955 | PLPP5 | coding | upstream | 44927 | 8828785 ~ 8833955 (-) |
CI01000304_08836330_08859572 | WHSC1L1 | coding | upstream | 52024 | 8835882 ~ 8860729 (-) |
CI01000304_08899490_08900383 | NA | coding | upstream | 115303 | 8899161 ~ 8900772 (-) |
G423589 | NA | non-coding | downstream | 80981 | 8672676 ~ 8673012 (-) |
G423588 | NA | non-coding | downstream | 81413 | 8671798 ~ 8672580 (-) |
G423557 | NA | non-coding | downstream | 211307 | 8542460 ~ 8542686 (-) |
G423551 | NA | non-coding | downstream | 239752 | 8513906 ~ 8514241 (-) |
G423529 | NA | non-coding | downstream | 275329 | 8478182 ~ 8478664 (-) |
G423615 | NA | non-coding | upstream | 165186 | 8949044 ~ 8949311 (-) |
G423960 | NA | non-coding | upstream | 223750 | 9007608 ~ 9008693 (-) |
G423972 | NA | non-coding | upstream | 253755 | 9037613 ~ 9098217 (-) |
G424004 | NA | non-coding | upstream | 377944 | 9161802 ~ 9162014 (-) |
G424006 | NA | non-coding | upstream | 380660 | 9164518 ~ 9164832 (-) |
G422810 | NA | other | downstream | 1101290 | 7630159 ~ 7652703 (-) |
G422378 | NA | other | downstream | 1970947 | 6744679 ~ 6783046 (-) |
G422354 | NA | other | downstream | 2122494 | 6631086 ~ 6631499 (-) |
CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | downstream | 2270498 | 6480743 ~ 6483986 (-) |
CI01000304_04661808_04672936 | PPWD1 | other | downstream | 4081046 | 4661766 ~ 4672947 (-) |
G423386 | NA | other | upstream | 78365 | 8862223 ~ 8865296 (-) |
CI01000304_09566730_09575706 | NA | other | upstream | 784498 | 9566730 ~ 9575706 (-) |
CI01000304_09737662_09738777 | NA | other | upstream | 952888 | 9736746 ~ 9738777 (-) |
CI01000304_10160458_10161768 | VAMP2 | other | upstream | 1369588 | 10160458 ~ 10163762 (-) |
CI01000304_10191594_10192287 | RNASEKB, RNASEK | other | upstream | 1406716 | 10190574 ~ 10192357 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
zebrafish (Danio rerio) | XLOC_002713 | loxl2a | coding | NC_007121.7 | CM002894.2 | 20407888 ~ 20445549 (-) |