CI01000304_09284328_09286980 (AVD)


Basic Information

Item Value
gene id CI01000304_09284328_09286980
gene name AVD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9284189 ~ 9287032 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09284328_09286980.mRNA
ATATGCAAATTAATTAACTCCAGATTACCGTAGGCATGGTGAAGAGTGAAATATGACCCACTATGTCTCTCAGTTTTTGAACAAGATGAGCTCATTAATGTGGTATTTGCTTTTTGTGACTTTGATAACCTCTCAAACAGTGCTTGCAAATGAGTCCTCAACGCTGGATATGAAGGTCGATGCATGTAATATTACCGGCGTTTGGCGGAATGAGCTGGGCTCCACGCTGCGTGTGAAGGCAGAGGGGTCAGAGGTCAGAGGTGTTTATCAGACCGCAGTGGAGAGTACGCGCGGCGCCGCTGGTTTACACCGCACAGCACGAATCATCGGGATAGTTGGTGATGGGACTCAACCTACCGTTTCATTCTCCGTGCTGTGGGAGAAAGGTTCATGTTCTGCTTGGGTTGGTCAGTGCTTTATTTTACGTGACGGTGCACAAGTGCTGAAAACGTTCTGGATGTTGCGCAGTGTAGCCGACAACTTGGCTGGTGACTGGGGAAGTACAAGGTTGGGAGAAGATCTTTTTTTCAAGACTTGAATTTCAAATGAAGTCTGTAATAGATTCAATGTCATTTAAATTCTTTAAAGGTGTTGATTTTTCAAGGAGCTTGAGCTTGTAGTATTTAAACCTACTGAGACATTTAAAAGCCTTGTATAAAACCCTCAAGCTTAATAAA

Function

symbol description
avd Enables biotin binding activity. Predicted to be located in extracellular region. Is expressed in brain; caudal fin; eye; gill; and pleuroperitoneal region.

GO:

id name namespace
GO:0009374 biotin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09284328_09286980.mRNA True 677 mRNA 0.44 4 9284189 9287032

Neighbor

gene id symbol gene type direction distance location
CI01000304_09046090_09129612 PCDH1 coding downstream 154577 9046090 ~ 9129612 (-)
CI01000304_08913076_08936241 KCNIP3B, KCNIP3 coding downstream 347948 8912702 ~ 8936241 (-)
CI01000304_08904762_08909795 NA coding downstream 373699 8904478 ~ 8910490 (-)
CI01000304_08899490_08900383 NA coding downstream 383417 8899161 ~ 8900772 (-)
CI01000304_08836330_08859572 WHSC1L1 coding downstream 423460 8835882 ~ 8860729 (-)
CI01000304_09342385_09345935 NA coding upstream 54822 9341854 ~ 9345935 (-)
CI01000304_09508090_09519201 NA coding upstream 220265 9507297 ~ 9519333 (-)
CI01000304_09566730_09575706 NA coding upstream 279698 9566730 ~ 9575706 (-)
CI01000304_09577749_09578512 NA coding upstream 289087 9576119 ~ 9578512 (-)
CI01000304_09609674_09619712 NA coding upstream 322478 9609510 ~ 9620030 (-)
G424079 NA non-coding downstream 20446 9263533 ~ 9263743 (-)
G424075 NA non-coding downstream 27842 9255908 ~ 9256347 (-)
G424033 NA non-coding downstream 67551 9216428 ~ 9216638 (-)
G424025 NA non-coding downstream 76495 9207483 ~ 9207694 (-)
G424016 NA non-coding downstream 90661 9193299 ~ 9193528 (-)
G424088 NA non-coding upstream 5664 9292696 ~ 9293123 (-)
G424089 NA non-coding upstream 8812 9295844 ~ 9296066 (-)
G424091 NA non-coding upstream 14799 9301831 ~ 9302281 (-)
G424051 NA non-coding upstream 29627 9316659 ~ 9374445 (-)
G424054 NA non-coding upstream 41302 9328334 ~ 9331490 (-)
G423386 NA other downstream 418893 8862223 ~ 8865296 (-)
G422810 NA other downstream 1631486 7630159 ~ 7652703 (-)
G422378 NA other downstream 2501143 6744679 ~ 6783046 (-)
G422354 NA other downstream 2652690 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 2800694 6480743 ~ 6483986 (-)
CI01000304_09737662_09738777 NA other upstream 449714 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 866414 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 903542 10190574 ~ 10192357 (-)
G424808 NA other upstream 1157323 10444355 ~ 10542665 (-)

Expression


Co-expression Network