CI01000304_09359193_09364869


Basic Information

Item Value
gene id CI01000304_09359193_09364869
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9359097 ~ 9365174 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09359193_09364869.mRNA
ATATAAATAGCTACTATCATTAATTATCACTGTAATACATATTTACTAGTGGCGTGAAAAATTACTGACTTCCTTACCTTACTGACCTTAACAACAATGACCATGAAAAACAACTGTTTACATCACTCCACAATCGTGTCCTCTTTTTGGCCATTAATGAGAGCACGCATTAGGAAGGAGCCTATTTCAATGGAGCTGTGGATATGGACATGGCAGGTAACCTGCCTGGCGCTCATCGCGTCTGTGATGGATGTAGTTCTGGCACAGATTCGTTACACGATCCCAGAGGAACTGGAGCACGGGGCTTTTGTTGGAAATATTGCTGAGGATCTGGGATTAGACACCAACAAACTCTCAATCCGCCGATTTAGAATAGTCTCAGGTGCGAAACGGCAATATTTAGAGGTGAATTTAGAAAACGGGGTTTTATTTGTCAATGAAAGAATTGACCGAGAAGAGTTGTGCGAACAAAATCCATATTGTTCATTCCATCTTCAGGTTGTGATCGAAAACCCATTAGAATTGTATAGGGTCGAAGTTGAAATATTAGATGTCAACGACAACTCTCCTGTCTTTCCATGGAGTGAATTTAACCTGGATATCTCCGAATCCGCCGCGCCTGGATCGCGCTTCCCACTGGAAAGCGCGCAGGACCTGGACGTCGGTGACAACTCTCTGCGCTCGTATTTGCTGAGCGTAAACGAACACTTCGTCCTGGACGTCCAGACGCGCAGCGACGGCAGTAAGTTCGCAGAACTGATTCTCGAAAGTCCGCTGGACCGGGAGCAGCAGAAGACTCACTTGATGGTTCTTACAGCGGTGGACGGAGGCACGCCAGAGAGGTCGGGCACTGTGCAAATAAACATCACTGTACTGGATGCCAACGACAACGCGCCTGTGTTCGATCAGAACTTTTATAAAGTGAAGCTGGCTGAAAACGCACCGCGAGGCACTGTCGTGATAAAACTAAACGCCACTGATCTCGATGAAGGACCCAATGGAGAGATCACATACTCTTTTAGCGGGCACGCTCCAATGAGAGTGCGCGAGCTGTTCAGCGTGGATTCCCGCACTGGAGAAATCAAAGTAAAAGGAGTTATAGATTATGAAAAGGCACGAATGCACGAGATTTATGTACAAGCCAAAGACAAGGGACCGTCTGCGGTGGCAGTGCACTGCAAAGTGATGGTTAACATCATAGACGTCAACGACAATCTTCCTGAAGTGATTCTTACATCAGTATCTACGCCTGTCCAAGAAGATGCGCCCCCTGGCACAGTGATAGCAGTCATTAGCGTTATGGATAAAGATTCTGGGGAAAACGGAAATGTTGATTGTGAAATTCCCCATCACGTTCCCTTTCAGCTGCACTCATCTTTTAAAAACTATTATACGTTGGTTACGTGTGATTTTCTGGACAGAGAGTCCATTTCAGAGTATAACATCACTCTGACGGCGCGTGATATGGGCTCACCGCCTCTTTTTACAAGGAAAACAATTTTAGTGCAAGTGTCTGACATTAACGATAACGCACCGCGTTTCAAACAGCCATCCTACACGGTCTACCTGACCGAAAACAACGCGCCAGGAGCCTCGATTTGCACTATCACCGCACAAGACGCAGACTCGGATCAGAATTCCTACTTATCCTACTCTATTCTTGAAAACGACATCCATGGAATGCCAGTGTCCACCTACGTGTCCATCAATTCAGATAATGGCAACATTTACGCACTGCGTTCTTTCGACCACGAGCAGCTCAGAAACTTTCAGATCGTGGTTCAGGCCGAAGATGCTGGTTTTCCGCCTCTCCGCGCGAATGTAACAGTTAACGTGTTTGTTTTGGATCAGAATGACAATCCTCCAGTCGTTGTATCCCCAATGCCCGAGAATGACACCGCAGCGGTTGTAGTTGTCCCTAGATATGCTGATGCCGGATACCTAGTGGCTAAAATCACCGCCATGGACGCGGATGCCGGGCAAAACTCGCGTCTCTTTTATGAAGTCCTCCAAGCTACAGATCTCAGTTTGTTCAGTGTTGCGCTGTACACTGGGGAGATCAGGACAATTCGCCGGCTGATGGACAACGACCCCAGGAGGCAAAGGCTAGTGGTTTTGGTCAAGGACAACGGTCAGCCGCCCCTATCGGCCACGGCCTCCATCATGTTGTCAGTTGTTGACAGCGTGCCGGAATCCTTGCCTGATTTTGGTGACCTCGCGCTCAGCCCTCAGTACAGGTCAAACCTCACGCTGTATTTAATCGTGTCTCTGGGCGCGGTTTCATTCACGTTTCTTGTGGCTATTATTGTCCTGGCTACAATTAAGGGACACAAGGACAGAAACTCGTGCTGTGGATTTCATTCTAAGGACCCCGCCAGTGACGTCATTAAAAAGTCTAACTTGAACATTCACATATCACCTGGATCAAAGGGACCCACGCACTGCGTGGAAGTAAACGCGAACAACCCAATAGGTCAAAACTACTGCTATAAAATGTGTTTAACTCCAGAGTCATCTAAAAGTGACTTCATGTTCCTCAAGCCTTGTAGCCCGACGGGAACATCTTCCCGAAATAATATCAAGGAAATGGAAAACAAAACTTTGACCTGGAGCCCAACCAGCCACAGTCATGGTACAAGGAATGGGACGACCTCTACAAACGAGCTCAAACAGGGTAACAAAGACCAAACACTGACCAAGAACCAGCTTAATTATACATATAAAAGTCATACTCCAATAAACACAGGGAGGACACTGCAGCGCAGACTGATTCAGGACTCAGACAACTATGCTTACACATCTGTTCCACAGTACTGGACCTGGGGAAATCACATGCATGATTATAAGACCTCACCTAAGGTTGGTGGCTTTCCAAACCGCTCATGGACACGTTACAACCAACAGGATTCAATTCAACCCTCACCAGACTATCAACATAATGTTTACATTCCTGGAACACCATCAACACTCTGTACACTCAAGCTGGCAAACAATGGGGACATTGAAGTCTACAACTCATTCTCAACTTTTGGCAAAAAGAAAAAGCCAAACAATAATCGTCAAGAGGACGCAGTAATAACCAATGATTTTTTCAAATGATTTTTCCAGTTGTATTTTTCACCTGTAGGTTACTTTCTGTATATAAGTTGTATATATTTCAGTCAGATTACATGTGCTGTATAATTTGCCTTCATAAATTTCACAACAAGCACTTAAAGTACTCTGATAATTCGTTTATTTATTTATTTATTTATTTTTTGCATCTTTTTCCAGATATCTTCAGTGTTCAGAAACTTTCTGAAAGCATTAAACAGATGGTTGCTTTAATTGTTATTACCCATATTGGTGAGAATTCAGGTTATATTTTCCAAAATGATATCCCTTTTGTTTCCAAAATGTACAGA

Function

NR:

description
protocadherin 1A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09359193_09364869.mRNA True 3404 mRNA 0.45 5 9359097 9365174

Neighbor

gene id symbol gene type direction distance location
CI01000304_09325707_09339195 FBXW11A, FBXW11B, FBXW11 coding upstream 19356 9325707 ~ 9339741 (+)
CI01000304_09310530_09315160 NA coding upstream 43904 9310530 ~ 9315193 (+)
CI01000304_09298662_09308685 TRPC7B, TRPC7, TRPC7A coding upstream 50230 9298582 ~ 9308867 (+)
CI01000304_09178746_09214392 NA coding upstream 143989 9178674 ~ 9215108 (+)
CI01000304_09030903_09042018 NA coding upstream 317056 9030566 ~ 9042041 (+)
CI01000304_09367881_09372547 NA coding downstream 2297 9367471 ~ 9374245 (+)
CI01000304_09380606_09383014 PCDH1A3, PCDH1A4 coding downstream 15432 9380606 ~ 9383014 (+)
CI01000304_09384297_09390124 NA coding downstream 19123 9384297 ~ 9390194 (+)
CI01000304_09391007_09394640 NA coding downstream 25719 9390893 ~ 9394650 (+)
CI01000304_09395317_09401634 PCDH2AB2 coding downstream 30143 9395317 ~ 9401634 (+)
G423753 NA non-coding upstream 29458 9329053 ~ 9329639 (+)
G423809 NA non-coding upstream 56021 9302829 ~ 9303076 (+)
G423803 NA non-coding upstream 65934 9292803 ~ 9293163 (+)
G423747 NA non-coding upstream 71648 9284128 ~ 9287449 (+)
G423799 NA non-coding upstream 77664 9281232 ~ 9281433 (+)
CI01000304_09457224_09468602 PCDH1G18 non-coding downstream 94678 9457068 ~ 9468909 (+)
G423826 NA non-coding downstream 152697 9517871 ~ 9518357 (+)
G423843 NA non-coding downstream 155308 9520482 ~ 9520813 (+)
G423848 NA non-coding downstream 162802 9527976 ~ 9528197 (+)
G423836 NA non-coding downstream 201247 9566421 ~ 9567016 (+)
G423614 NA other upstream 409675 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 686542 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1124137 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 1378362 7979078 ~ 7980735 (+)
G421435 NA other upstream 1874409 7484141 ~ 7484688 (+)
CI01000304_09564068_09565679 HRH2B other downstream 199431 9561005 ~ 9565778 (+)
G424246 NA other downstream 755225 10116343 ~ 10127322 (+)
G424251 NA other downstream 823648 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 1190112 10555216 ~ 10572164 (+)
G425718 NA other downstream 3063531 12436554 ~ 12436605 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002079 BX957322.3 coding NC_007121.7 CM002894.2 21511495 ~ 21521507 (+)
eurasian perch (Perca fluviatilis) G168779 LOC103357740,LOC102196465 non-coding NC_053127.1 CM020924.1 25841925 ~ 25844342 (-)