CI01000304_09367881_09372547


Basic Information

Item Value
gene id CI01000304_09367881_09372547
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9367471 ~ 9374245 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09367881_09372547.mRNA
ATATAAATACATTTATTTATTTGTTCAACATTTGCAGACAAACTGTACATTATATATGCTGGCTAATTTCAGAAATAATATATATATTTTTTTTCCTCCATAAAATACATTATTGTATGTAAACGTTTATCTTCACACGATGTCGCTGCACTACTGCTATTCACTTTAAGGGGAAATGGGATGCAAGCACAGCCAAGCCTTGCTTTCATAATGCTGTTGGACAGAAGCAGTCAGAGCAGCACTGAAGCTCAGCTGAATCTGATCAGCGGGCGGGATCCACGGCACGGCGCTATGGCGATGCTCTGCTGGATGCTTTTACAAATCCAAATACCCGCTAACCTCCATTCGTTTTCGAAAACATTGCTATATTTCTTGTGAAAGACAGCGAAAGCATTGACGTGCGCTCTGCAATGGATCCAAGGAGGAGATGGCGTCTCGGTTTCGCCGTCCTCTCCGCGCTGTGGAGTCTCGCCTCGGCTGTAACAAGATACTCCATCCCCGAGGAAATTCCAGTGGGCTCCGTGATCGCAAATATCGCCACGGATTTGGGCCTTGACGCGCACAGCCTGTTGGAACGAAAGGTAAAGCTGGATTATATTCATAGCAAGAAATACCTAGAGATAAATAAAGACACCGGAGAACTGTTTATCGCTGAGAAAATCGACCGGGAGTATTTATGCCCGGCCAAAACATCATCGTTCTGTTTCCTCAAGATGGATGTAATAATTGAGAATCCAATACGCATATTTAATATCGAATTGGAAATTATGGACATAAATGACAACGCGCCTCAGTTCAGAAGGGAGAGAATACCGCTCGATGTTTCGGAATCAGCAACACCTGGAGAGAGATTTTCTTTAACAAACGCGGTGGATGCAGATGTTGGAGAGAACTCAATCGAGACCTATTATCTGAGTGAAAGTAACGAGTTTACCATTGAAATCCAGTCTGGAAGTGACGGGACTAAATACGTCGACCTGGTGCTAAAAGCTAGTTTGGACAGAGAAAAACAAGCTGTCCACACACTAACCCTCACCGCTGTGGACGGCGGCATACCTGCGCGTTCAGGTACGGCCAGCATTATCATTCAAGTGCTGGATATCAACGACAACGCCCCTCAGTTTGATCGACAAGTCTACTCTGTTGACCTCATTGAAAATGCACCAATCGGGACACTGATTATGCAGCTGAATGCAACAGATTTGGATGAGGGTGCCAATGCGGATGTCATATACTCTTTCACTTTATACACATCTGAGAAAACACAAGAAAAGTTCTCTTTGGATCCCACCAATGGAGAAATAAGAGTAAAAGACGTGATTGATTTTGAAGAAGTAAAGAGTTTTGAGATGTATGTTGAAGCCAAGGACAAGGCAGTGAATCCGCTTTCAGGTCAGTGTAAAATTTTAGTGTTCATCACCGATCTAAACGACAACCATCCTGAGATTACGATAAAATCTTCACAGAGTTTGATTAAAGAAAATGACCCTGTAGGAACGGTGATCGCCGTCATCAGCGTGAGCGACAGGGACTCTGGAGATAATGGCAAAGTTGTTCTCTCCATCCACAATGCTGAGATGTTACCTTTTGCTCTTAATAAGTCATCGGAAGACTTTTTTGCATTAACAGTCACTGAATCACTTGACCGTGAGCGCATCCACAGTTATGACATCACACTTCATGTGACCGACAGAGGAACCCCTCCTCTGACCGATAATGAGACGATCAGTGTTACAATTCAAGACGTCAATGATAACGCCCCAATGTTCCCTCAAATCCTCTATACCATTCATCTGATGGAAAACAATGAGCCTGGAGCATTGCTAGCCTCACTAACCGCTCATGACCCAGACCTGCATGAAAATCAGTATCTTGTTTACTTCATCATAGAAAAGGAGATAGCCAACACCTCAATGTCCATGCTGTTTTCAATCAATCCAGAAAACGGCAACCTCTACGCTTTACGCACGTTTGACTACGAAAGAGAGAAGGAATTTCTGTTTCATATTGAAGCGAGAGATTCTGGACTCCCTCCTCTTAGCAGTAATGTAACCGTACACATCATCATCCTGGACCAAAACGACAACACACCCCTCATAGTTTCTCCATGGCGTCCGCAGGGCGCTGTTATAGAAGAAAAAATCCCGAGGTCAAGCGATAAAGGATCCCTGGTCACCAAGGTCATTGCGTTGGATGCTGACTCCATGCAGAACTCTCGTATAACATATCAGTTTCTCCAGATCACCGACACCCCACTATTCAGCCTCGATCAGTACAACGGCGAGATACGAACCACGCGGATGTTCAGTTACAGGGACCCCAAAGATCAACACCTGATCATCATAGCCAGAGACAATGGAGAACCTCCTCGCTCTGCCACGGTGACCATTAAGATCTCCACAGTGGACCAAGTAGTCACGCAGTTTACAGAAACTACAGAGGTGCCTGTCGAATACGACCTGATCACCGATCTAAACCTGTACTTGTTGATCGGTTTGGGGTCGGTGTTGTTTCTGCTGCTCATTACTATCCTGGTGATCATAGTGCTGAAATGTCAGGAACCAAAACCCTCACAAGCGGCTCCTCAGGGAAGGAACAGCATCATCAGCCAGAGGAACTCCTCCACCATCGCTGACTCTACTCTCATCTCAAGTGATGCCTACTGGTACAGTCTGTTTCTGGCAGAGACTAGAAAAGGGAAGGTGGTGGTGCGGCAGCCCCTTCCTAACGGAGCAGGGTTTATTGTGTCAAGTATCCCGGGAAGTGCTGCGCTGACTGAGACCAGTGCATCAAGGAGTCAAGCAGTGATTTACCATGATCTGGACATGTTGACTGATGGTTTACAACCTTCCACACCAGGCTCGCTGTCCATGAGGGACAGATTGATCTTCTGCTTTACCGTTTTTCAGGGTTTAATTTATTAATTTATTCAATGAACTCTGTTCAGTTATTTTTACCATCACTTCTTCTCTTGCTTCCTCTTCTTCAACATTGCCTTTTGGGCTAATTGAAGAATTAACTTTCAATTGACTTTTTTGATATCGAGACCAACATTGTGTCAGAGAAAGACATTCAGCGCTGCTGGATCTCATATTTTTGGTGATTTAAGGCTGGGTCTAACAACTATATGTCAGCCATTTGTAACCACATTGAGCATGACTTTGCATGGCTGTGACAAACAAAATGGACTTTTTGTATCTAAAAGATTTCTATATAGACTCTTTTACAGAAGAGAGAGAAGTGATACTTCATGACTACAAGAAGAACCTACCTAGACATTCAGCCTTTTGTGGTTCCAGTAAGATATGAACTGCAAGGACAGCTGGTTCTGCTATTAATGATGCTCTATTTTTACAGTTTGAACATGCTGATGAGAAAGCTGTGATCAGATGAGCACAATCTAATGAGCCAGGCATTGTCTATACCTCAAAACACTTGGTTTCACATCAGTGTGATGCACATGTATACATAGATTCATGTTTGTTTTTCTCCTGTTCTGTAAACAGCCTAAAATTGACATTCTCTTGCCATTTTGAAAATGAAAGAACGCTATTTTAAATCATAGACAAATGCTACAAAGAGTAATAATTACATTACAATTAGTGAGGTGCTAAAATTTTACTGAAAACCAAGGAGACAAAAAAAGTGCAAATCCAACAAAAAAGATAAAAAAATTTATTAATCTAGCTTTTTGCAGATGTATGTAGCCAATGCCAGGATATTATTCTGCTACAAATATTAATAACTTACAACAATATAACGTTTTTTTTTTTTTTTTTTTTTTTTGTACAAGTATCAACAATTGTACTGTTAAATTGCTACTGAGTGTCATTTTTGGCCTTGTTTACTGAAGTTTTTGAGGTTTATATTGTTTTGTATTATGAAAATGAGATAAAAATGCTTGTTAATGTATTTAATGCTGCTTCTTTTATGATGACAGTGCAATGTTTTAAGAAATTATAATTTGTGGTGAGATATTTGGCAGTTTCATTATATCATTATTATGTAGATCTAATTATATCATTACAGAAATCCAAGCTATATTCTTTTCCGATTTGTTGCAGCAACCGGAGAAAAAGTGAGAAGGAAAGGAGTGAGAAAAAAAAAAAGTGGTGTAGGAGGGACAAGGAGAAAGAGAGAGGGGAAAAAAACAGCAATATAGGTCACAGATCACATGTGATCTGTATTTAAATTGACACATGCTGTGACCAAGAGACAGAATGACCCTCAAAGTTACCTTTATAGTATTGACAGCCATGTAATTCATTAGAACTTACTTTCAGTAAAGGTGACAGCTCAAATTGGAGTTCCTGACAGCAGATTTGAGAATTTAGAGCAAAATGACACAAGTAAAACAATTGCTGTGTGCCTTAGGGCAGAGAAAAGTGTGCCTGAAATTTGAAACAACAAAAAACAGTATGAAGTTCAGTATCTTGATACTATCAGCATACTGCTATACATCACAATATCATCGACATGCCTTGGGTTACTCGCTTCTGTATTTGTATTTACATTCTGTTGCCTTACTTGCGAAATGTCCATATGCAAACAAAGTAAACAATGCCTTTGTGTCCTTGCTGGACTTTATGATTTGCCCCTTGCTTGTAAATACAGCAATCTGA

Function

NR:

description
protocadherin 1A2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09367881_09372547.mRNA True 4622 mRNA 0.41 2 9367471 9374245

Neighbor

gene id symbol gene type direction distance location
CI01000304_09359193_09364869 NA coding upstream 2297 9359097 ~ 9365174 (+)
CI01000304_09325707_09339195 FBXW11A, FBXW11B, FBXW11 coding upstream 27730 9325707 ~ 9339741 (+)
CI01000304_09310530_09315160 NA coding upstream 52278 9310530 ~ 9315193 (+)
CI01000304_09298662_09308685 TRPC7B, TRPC7, TRPC7A coding upstream 58604 9298582 ~ 9308867 (+)
CI01000304_09178746_09214392 NA coding upstream 152363 9178674 ~ 9215108 (+)
CI01000304_09380606_09383014 PCDH1A3, PCDH1A4 coding downstream 6361 9380606 ~ 9383014 (+)
CI01000304_09384297_09390124 NA coding downstream 10052 9384297 ~ 9390194 (+)
CI01000304_09391007_09394640 NA coding downstream 16648 9390893 ~ 9394650 (+)
CI01000304_09395317_09401634 PCDH2AB2 coding downstream 21072 9395317 ~ 9401634 (+)
CI01000304_09401866_09405032 NA coding downstream 27621 9401866 ~ 9405145 (+)
G423753 NA non-coding upstream 37832 9329053 ~ 9329639 (+)
G423809 NA non-coding upstream 64395 9302829 ~ 9303076 (+)
G423803 NA non-coding upstream 74308 9292803 ~ 9293163 (+)
G423747 NA non-coding upstream 80022 9284128 ~ 9287449 (+)
G423799 NA non-coding upstream 86038 9281232 ~ 9281433 (+)
CI01000304_09457224_09468602 PCDH1G18 non-coding downstream 85607 9457068 ~ 9468909 (+)
G423826 NA non-coding downstream 143626 9517871 ~ 9518357 (+)
G423843 NA non-coding downstream 146237 9520482 ~ 9520813 (+)
G423848 NA non-coding downstream 153731 9527976 ~ 9528197 (+)
G423836 NA non-coding downstream 192176 9566421 ~ 9567016 (+)
G423614 NA other upstream 418049 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 694916 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1132511 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 1386736 7979078 ~ 7980735 (+)
G421435 NA other upstream 1882783 7484141 ~ 7484688 (+)
CI01000304_09564068_09565679 HRH2B other downstream 190360 9561005 ~ 9565778 (+)
G424246 NA other downstream 746154 10116343 ~ 10127322 (+)
G424251 NA other downstream 814577 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 1181041 10555216 ~ 10572164 (+)
G425718 NA other downstream 3054460 12436554 ~ 12436605 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002080 BX957322.1 coding NC_007121.7 CM002894.2 21522545 ~ 21530675 (+)