CI01000304_09380606_09383014 (PCDH1A3, PCDH1A4)


Basic Information

Item Value
gene id CI01000304_09380606_09383014
gene name PCDH1A3, PCDH1A4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9380606 ~ 9383014 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09380606_09383014.mRNA
ATGGATGTCACAGAATCGTATGGCTTCTGGATCGTTTTATTTCTGTCTTTATGGAAATCTTCGCTTGGCCAGATTGTCTATTCCGTCTCCGAGGAGGTAAATAAAGGAACCGTGATCGGGAATATAGCAAAAGAGCTCAAGATCAGTGCTCAGGAACTAGAATCTCGCATGTTTCAGATTATGCCTGGATCAAATGCAAAGTATTTTGATGTAAATGTGAAAACGGGGTCGCTGTTTGTCAAAGACAGGATTGATCGTGAGGAGTTGTGTGGCAATAATCAGAAATGTACATTGAATTTAGAAGCTCTTGCTCAGAATCCTCACAGACTTTATCGGCTTGAAATTATAATTGTGGATGTGAACGACAATGCTCCGTTTTTTCCTGACAGCACATATATTGTAAATGTTACAGAGATTGCAAATGAAGGGGAAAGATTTCATCTTCCAATAGCGAAAGATTCAGACGTCGGCAGTAATTCTCTGAAAGATTACAAACTCAGTTCAAATGAATATTTTTCTTTAGATGTTCATAGTGGGCAACAGAGTATATCTGCTGAGTTAGTACTACAGAAAGCTTTAGATAGAGAGAAACAAGCTGTTATTCACTTAATATTAACCGCTATTGACGGAGGAAAACCTCCCAAATCTGGAACCTTGAGTATTGTTGTTAACGTCATGGATATAAACGATAATACGCCTATTTTCAGCAAACCTTTGTACAAAGTTAAAGTAAAAGAAAACACACCAATTGGAACCAAAATAATTTCTGTTTCTGCCAGTGATTTGGATGAGGGCATCAATAGTGAAGTTCAGTATTCATTTCTTGGAAATACCGATGAAATGAACCGGTTTACAATTAATTTTCACTCTGGGGAAATTGTTGTTCAAGGACAAATTGATTACGAAGAAAACTCTGCAATTGAACTCCGTGTTCAGGCGAGAGATAAAGGCAGTCCTCCAAAAAGTGCACACTGCAAAGTTTTAATAGAAATTGTGGATGAGAATGACAATGTACCAGAGATAGTTACAACTCCTCTGTTGGAAAGTGTGAAAGAGGACGCAAAACCGGGAACTGCTGTTGCTTTAGTCACAGTTTCTGATAAAGATGGAGGTAAAAACGGCGTTGTGCATTGTGTTGTAGAGGGTTCTTTTCCTTTTAAACTAGAGATGTCATATAACAATCATTATTCTCTAGTGGTAGACGGACCTCTGGACAGAGAGAGTGTTTCTCAGTATAACATCACAATTACAGCTGCAGATGAAGGAGCTCCGCCTCTTTCCAGCAGCACTGTTATAACTGTATATATCTCTGATGTTAATGACAATGCTCCACATTTCCCAGCACCCGTTATTAACGCTTTTCTAAGTGAGAATGGTCAAGCTGGAGGTCTCGTGACAAAAGTGACAGCTGATGATTCAGACACTGGTGAGAACGCAGAACTTTCATATTCACTGTTAGACAGTTCCAGCTCCAGTGTTCCTATAACAACACTGATGAATATAAACTCTTTGAGTGGAGAAATATTCAGTTTGCAATCATTTAATCACGAAGAAACGAAAAGATTTCAGTTTGAAGTGATGGCAACAGACTCTGGTGTTCCTCCTCTGAGCAGTAATGTGATTGTAAATGTGTTTATTCTGGATGAGAATGACAACAGTCCAGTTATTTTACCGCCTTATTCTGACCCTGGATCAGTTAATACTGAGAACATTCCCTACTCTGCTGAAGCGGGATACTTTGTAGCCAAGATCAGAGCTGTTGATGCTGACTCTGGATATAACGCTCTTCTGTCTTATCATATGAACGCGGAGTTGATCAGCATTAATAGTGGAGAAGACACTTTTACGCGCACCCAAACTCTTCCTAACTCAGAGAAG

Function

symbol description
pcdh1a3 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and nervous system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.
pcdh1a4 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
Pcdh1a3 protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16493 PCDHA; protocadherin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09380606_09383014.mRNA True 1878 mRNA 0.39 2 9380606 9383014

Neighbor

gene id symbol gene type direction distance location
CI01000304_09367881_09372547 NA coding upstream 6361 9367471 ~ 9374245 (+)
CI01000304_09359193_09364869 NA coding upstream 15432 9359097 ~ 9365174 (+)
CI01000304_09325707_09339195 FBXW11A, FBXW11B, FBXW11 coding upstream 40865 9325707 ~ 9339741 (+)
CI01000304_09310530_09315160 NA coding upstream 65413 9310530 ~ 9315193 (+)
CI01000304_09298662_09308685 TRPC7B, TRPC7, TRPC7A coding upstream 71739 9298582 ~ 9308867 (+)
CI01000304_09384297_09390124 NA coding downstream 1283 9384297 ~ 9390194 (+)
CI01000304_09391007_09394640 NA coding downstream 7879 9390893 ~ 9394650 (+)
CI01000304_09395317_09401634 PCDH2AB2 coding downstream 12303 9395317 ~ 9401634 (+)
CI01000304_09401866_09405032 NA coding downstream 18852 9401866 ~ 9405145 (+)
CI01000304_09415682_09436716 NA coding downstream 32132 9415146 ~ 9437812 (+)
G423753 NA non-coding upstream 50967 9329053 ~ 9329639 (+)
G423809 NA non-coding upstream 77530 9302829 ~ 9303076 (+)
G423803 NA non-coding upstream 87443 9292803 ~ 9293163 (+)
G423747 NA non-coding upstream 93157 9284128 ~ 9287449 (+)
G423799 NA non-coding upstream 99173 9281232 ~ 9281433 (+)
CI01000304_09457224_09468602 PCDH1G18 non-coding downstream 76838 9457068 ~ 9468909 (+)
G423826 NA non-coding downstream 134857 9517871 ~ 9518357 (+)
G423843 NA non-coding downstream 137468 9520482 ~ 9520813 (+)
G423848 NA non-coding downstream 144962 9527976 ~ 9528197 (+)
G423836 NA non-coding downstream 183407 9566421 ~ 9567016 (+)
G423614 NA other upstream 431184 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 708051 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1145646 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 1399871 7979078 ~ 7980735 (+)
G421435 NA other upstream 1895918 7484141 ~ 7484688 (+)
CI01000304_09564068_09565679 HRH2B other downstream 181591 9561005 ~ 9565778 (+)
G424246 NA other downstream 737385 10116343 ~ 10127322 (+)
G424251 NA other downstream 805808 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 1172272 10555216 ~ 10572164 (+)
G425718 NA other downstream 3045691 12436554 ~ 12436605 (+)

Expression


Co-expression Network