CI01000304_09384297_09390124


Basic Information

Item Value
gene id CI01000304_09384297_09390124
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9384297 ~ 9390194 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09384297_09390124.mRNA
ATGAATCAGTATGTTGGATCCATATGGGCTGCGATTCTGCTGTCTTATTGTTGGACTTTATCCTCCGGTCAGATTGCCTATTCCGTCTCAGAGGAAGTGAATGTGGGAACCGTTGTCGGCAATATAGCAAAAGATCTTCACATCAGTGTGCTGGAACTGGAACCTCGTATGTTTCAGATTGTACATGGACCCAAAAAAAGGTATTTTGGGGTGAATTTAAAGACTGGGACTCTGTTTGTGAATAATCGAATTGACAGAGAATCGCTCTGCTCTACTGATGAGAAATGCACGATGCTTTTAGAAGCGATGGCTCATAATCCATTGAGTCTGTATAGAATAGAAATAAATATAATTGACATCAACGATAACGCTCCATCGTTTACGATTAGCAATCAGATACTGAACATAACAGAAGTGTCCTCTCTTGGAGAGAAATTTTCTCTTCCTTTGGCTGAAGATCCAGATTCAGGCAACAATGCCGTTAAAACCTATAAGCTTAGTCCCAACGAGCACTTTTCTCTGGATGTGCAGAACATAGAACAGAGTGTTACTGTCGAACTGGTGCTGATTAAAGCTTTAGATCGAGAAAAACAGCCTGTCATTCATCTAACACTGACTGCTGTTGATGGAGGGAAACCTGCAATGTCTGGAACATTAAAAATTACGGTCAATGTTTTGGATGTTAACGACAACTCTCCAGTTTTTAGCGAATCTCTTTACAAAGTGAAAGTGAACGAAAATATTGCTATGGGGTCCCAAATAATCTCCCTTTCCGCCTCTGATTTAGATGAGGGAATAAACAGTGATATAACATTTTCTATTGTCAAGCAAGGCAGTAGCAAAGCGTCAGATTTGTTTTCAATTGATCCCGATAGTGGACTTATAACAGTTAAAGGTAATATTGATTATGAAGAAAATGCTGCTGTTGAATTGAGGGTGGAGGCCAAAGATAAAGGCCAACCTCCTAAGAGTTCACAGTGTAAGGTGTTAGTGGAAGTAGTTGACGTGAATGACAATCCACCTGAGCTGATGGTGACTTCTTTGGCCAGTACTATTAAAGAGGATTCAAAAGTCGGAACAGCTGTGGCTCTAATTACAATCTCTGATAAAGACGGAGGTAAAAACGGAATAGTGCACTGCAATATTGTAGGTCAGGTGCCGTTTAAGATTGAGTCCTCTTATAAAAACTACTACTCTTTAGTTGTGGGTGGAGCACTGGACAGAGAAGAAATTGCGAATTTTAATATCACAATAATAGCTTCGGATGAAGGGACCCCTTCACTCTCTAGTACCAGTGTTATCACAGTTCATATATCTGATGTGAATGACAATGCGCCACGCTTCCCAGAAGCTGTGATGAACGTGTATCTGAAGGAAAACAGCCCGGCAGGTGACATTATAGCAACCGTGACCGCGCAGGATCCAGATATCAACAAGAACGCTCATATTTCGTATGCTTTAACTAGCAGAGACAAAACTGTGATTCCCTTAATCTCTATGATTGACATAAATAGTGAGAGTGGAGACTTGTTCAGTAAGCAATCATTTAACTACGAAGATCTTAAATCGTTTCAGTTTGAAGTTATGGCAACAGACTCTGGTGTTCCTCCTCTGAGCAGTAATGTGACTGTAAATGTGTTTATTCTGGATGAGAATGACAACAGGACAAAGGGACATGAGTTGTCTAAGGAAATGTACACAATGCCCTTGAAATTAGAACCTTAATTGAAACTGTTGTTCATTTGTCCCTAACAGGGTGGACATTTCTGATCTACCATTTCATTGATTTTGTTTA

Function

NR:

description
Pcdh1a3 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09384297_09390124.mRNA True 1795 mRNA 0.40 2 9384297 9390194

Neighbor

gene id symbol gene type direction distance location
CI01000304_09380606_09383014 PCDH1A3, PCDH1A4 coding upstream 1283 9380606 ~ 9383014 (+)
CI01000304_09367881_09372547 NA coding upstream 10052 9367471 ~ 9374245 (+)
CI01000304_09359193_09364869 NA coding upstream 19123 9359097 ~ 9365174 (+)
CI01000304_09325707_09339195 FBXW11A, FBXW11B, FBXW11 coding upstream 44556 9325707 ~ 9339741 (+)
CI01000304_09310530_09315160 NA coding upstream 69104 9310530 ~ 9315193 (+)
CI01000304_09391007_09394640 NA coding downstream 699 9390893 ~ 9394650 (+)
CI01000304_09395317_09401634 PCDH2AB2 coding downstream 5123 9395317 ~ 9401634 (+)
CI01000304_09401866_09405032 NA coding downstream 11672 9401866 ~ 9405145 (+)
CI01000304_09415682_09436716 NA coding downstream 24952 9415146 ~ 9437812 (+)
CI01000304_09439203_09444240 PCDH1G2, PCDH1G3, PCDH1G1 coding downstream 47736 9437930 ~ 9444726 (+)
G423753 NA non-coding upstream 54658 9329053 ~ 9329639 (+)
G423809 NA non-coding upstream 81221 9302829 ~ 9303076 (+)
G423803 NA non-coding upstream 91134 9292803 ~ 9293163 (+)
G423747 NA non-coding upstream 96848 9284128 ~ 9287449 (+)
G423799 NA non-coding upstream 102864 9281232 ~ 9281433 (+)
CI01000304_09457224_09468602 PCDH1G18 non-coding downstream 69658 9457068 ~ 9468909 (+)
G423826 NA non-coding downstream 127677 9517871 ~ 9518357 (+)
G423843 NA non-coding downstream 130288 9520482 ~ 9520813 (+)
G423848 NA non-coding downstream 137782 9527976 ~ 9528197 (+)
G423836 NA non-coding downstream 176227 9566421 ~ 9567016 (+)
G423614 NA other upstream 434875 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 711742 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1149337 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 1403562 7979078 ~ 7980735 (+)
G421435 NA other upstream 1899609 7484141 ~ 7484688 (+)
CI01000304_09564068_09565679 HRH2B other downstream 174411 9561005 ~ 9565778 (+)
G424246 NA other downstream 730205 10116343 ~ 10127322 (+)
G424251 NA other downstream 798628 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 1165092 10555216 ~ 10572164 (+)
G425718 NA other downstream 3038511 12436554 ~ 12436605 (+)

Expression


Co-expression Network