CI01000304_09395317_09401634 (PCDH2AB2)


Basic Information

Item Value
gene id CI01000304_09395317_09401634
gene name PCDH2AB2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9395317 ~ 9401634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09395317_09401634.mRNA
ATGGAAAGCGTAAGATATTTTTGCGTCATAACAGCTCTTCAGTTTTGTTTGTGGCAATCTTCATTCGGCAAGATTATCTATTCGGTCTCGGAGGAAGTAAACAAGGGTACTGTTGTCGGAAATATAGCAAAAGATCTCAAGATCAGTGTTCAGGAGCTGGAATCTCGTATCTTGCAGCTTGTATCCGGATCCAACAGAAAATATTTTGATGTGAATTTGAAAACGGGAGCGTTGTTTGTGAATGAAAGAATTGACCGGGAGGAGTTATGCTTCGCTCATCAGCAATGTGCTCTTAATTTGGAGGCTGTTGTTCAAAATCCTCATAGTCTTTATCGAATTGAAATTAATGTTCTGGATGTTAACGATAACGCTCCGTATTTTGTGGACAGCATTATAACGATAAACATTACTGAGGATGTTGTTCCAGGGGAGAGATTTCATCTTCCTGTAGCTGAAGATAACGACATTGGCATTAATGCACTGAAAGACTACAAACTGAGCAAGAATGAACACTTTTCTATTGACGTACAAACCGAAGAGCAAAGTGTGTCTGCTGAATTAGTGCTCCAAAAACCTTTAGATCGTGAAAAGCAATCGGTAATCCCTCTTGTACTGACAGCTGTTGATGGAGGAAAGCCTGCAAAGACAGGCACATTAAGTGTAATAGTGAATGTTATTGATATAAATGATAACAAGCCTGTCTTCAGCAAACCTTTGTACAAGATCAAGGTGAGAGAAAATGTCTCTGTTGGTACAAAAATCATTTCTTTGACTGCTACTGATTTGGATGAGGGCACCAACAGTGACATTATGTATTCCATAGCTGAACATGGAAACATAAAAAAGCAAAGTCTATTCACTGTGGTTCCTGAAACCGGTGATATTGTTGTAAAGGGTCAAATAGACCATGAGATAAATGCTGCAATTGAATTGCGAGTTCAGGCAAGAGACAAAGGCAGTCCACCAAAGAGCACCCAATGTAAAGTTTTAATAGAAGTTATGGATGAAAATGACAATGCACCAGAGATAGTTACAACTCCCCTGTTGGAAAGTGTGAAAGAGGACACAAAGTCAGGAACTGCTGTTGCTTTAGTCACAGTGTCTGATAAAGATGGAGTGTGTGATAATGGAGAGCCATCACTCTCAGCCACTATGTCCATGGATGTTGTGGTTGTTGAGAGTCTGGATGACATAAAGACATCATTCAGAGAAGTTCCTGTGAAAGAGGAGAGTTTTTCAGATCTGAATCTGTATCTGCTCATCGCTATTGTCTCGGTATCAGTCATCTTTTTACTGAGTCTCGTGGGTTTGATAGCAGCTAAATGCTACAGGACAGACGGCAGTTTCAGCAGGTACACCGCTCCAGTGATCAGCACCCATCCAGACGGAAGCTGGTCCTTCTCTAAATCTACTCAACAGTACGACGTGTGTTTTAGTTCAGACACAATAAAAAGTGATGTAGTCGTTTTCCCCTCAACGTTTCCATTGCCAGATGCAGAACTAATCAGCATTAATGAGGGAGACACTTTTAACAGGACTCAAACACTTCCAAGCACTACCAAGGGTGTTCAGAGTTTTGACGTTCCTCTGATCCCCGTGCCTGTGTATGGTCAGATTGTCTACTCCGTGTCCGAGGAAGTAAATATCGGAACTGTCGTCGGGAATCTGGTGAAGGACATGAATTTAAACGTCCAAGATTTGGAATCACGGGCGTTTCAGCTTGTTTTCG

Function

symbol description
pcdh2ab2 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and nervous system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
Pcdh1a3 protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16493 PCDHA; protocadherin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09395317_09401634.mRNA True 1729 mRNA 0.41 4 9395317 9401634

Neighbor

gene id symbol gene type direction distance location
CI01000304_09391007_09394640 NA coding upstream 667 9390893 ~ 9394650 (+)
CI01000304_09384297_09390124 NA coding upstream 5123 9384297 ~ 9390194 (+)
CI01000304_09380606_09383014 PCDH1A3, PCDH1A4 coding upstream 12303 9380606 ~ 9383014 (+)
CI01000304_09367881_09372547 NA coding upstream 21072 9367471 ~ 9374245 (+)
CI01000304_09359193_09364869 NA coding upstream 30143 9359097 ~ 9365174 (+)
CI01000304_09401866_09405032 NA coding downstream 232 9401866 ~ 9405145 (+)
CI01000304_09415682_09436716 NA coding downstream 13512 9415146 ~ 9437812 (+)
CI01000304_09439203_09444240 PCDH1G2, PCDH1G3, PCDH1G1 coding downstream 36296 9437930 ~ 9444726 (+)
CI01000304_09445257_09456640 PCDH1G2, PCDH1G3 coding downstream 43130 9444764 ~ 9456914 (+)
CI01000304_09457224_09468602 PCDH1G18 coding downstream 55434 9457068 ~ 9468909 (+)
G423753 NA non-coding upstream 65678 9329053 ~ 9329639 (+)
G423809 NA non-coding upstream 92241 9302829 ~ 9303076 (+)
G423803 NA non-coding upstream 102154 9292803 ~ 9293163 (+)
G423747 NA non-coding upstream 107868 9284128 ~ 9287449 (+)
G423799 NA non-coding upstream 113884 9281232 ~ 9281433 (+)
G423826 NA non-coding downstream 116237 9517871 ~ 9518357 (+)
G423843 NA non-coding downstream 118848 9520482 ~ 9520813 (+)
G423848 NA non-coding downstream 126342 9527976 ~ 9528197 (+)
G423836 NA non-coding downstream 164787 9566421 ~ 9567016 (+)
G423614 NA other upstream 445895 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 722762 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1160357 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 1414582 7979078 ~ 7980735 (+)
G421435 NA other upstream 1910629 7484141 ~ 7484688 (+)
CI01000304_09564068_09565679 HRH2B other downstream 162971 9561005 ~ 9565778 (+)
G424246 NA other downstream 718765 10116343 ~ 10127322 (+)
G424251 NA other downstream 787188 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 1153652 10555216 ~ 10572164 (+)
G425718 NA other downstream 3027071 12436554 ~ 12436605 (+)

Expression


Co-expression Network