CI01000304_09401866_09405032


Basic Information

Item Value
gene id CI01000304_09401866_09405032
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9401866 ~ 9405145 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09401866_09405032.mRNA
TGCAGCCAGGAGCTACATTTTCCTTGATCAGTGCGTTGGATGAAGATGTCGGACCTTTCTCTGTTAAAAGCTATAAACTGAGTCCTAATGAACATTTCTCATTAGAAGTTCACCCTGGTGGTGAACATGGCATGTCTGCAGAGCTCATCCTTCGAAAAGCTTTAGACAGAGAGAGAGAACCTGTAATTCGACTAGTCTTGACCGCTTCTGATGGAGGGAAACCGCCAAGATCTGGAACATTACAAATTATAGTTAATATTTTAGATACAAATGATAATGCTCCAGTGTTTAGCAATCCTCTTTATAAAGTTCGTGTGACAGAGAACACACCTCGAGGAACTAAGATAATCAAACTCAATGCTACTGACATGGATGAAGGTTCAAATGGGGAAGTAATGTATTTGTTTAGCAGTCATGGTCAGGAAAAAAATCTTGATGTATTTGCAATCAGTCCTGATTCTGGGGAGATTGAAGTAAAAGGTAATATTGATTTTGAGAACAAAGCTTTTTATGAACTCAGAGTAGAGGCCCATGATAAAGCCTCTTCCCCCATGACAACTACTTGTAAAGTACTAATCGAAGTCATAGATGTAAATGATAATGCACCAGAAATAGTAATAACGTCCCTGCTGTCTTCTTTAAGGGAAGATGCAAAAACTGGCACTGCTGTGGCACTAGTCACGGTTTCAGACAAGGATGGTGGAATGAATGGGAAAGTGAGTTGTAAGCTGCTAGGAAATTTACCTTTCAAACTTGAGTCTTCCTACAAAAATTATTACTCTGTTGTTTTAGAAGGCCAGCTTGACAGGGAAAAGATCTCCAAGTATAATGTTACCCTCATGGCAGTAGATGGGGGCACCCCACCTCTCTCCAGCACTAGTGTGATTTATGTTGAAGTTTCAGATGTGAATGACAGTCCTCCACAATTTAACAGAAAAAGCATTAATGTCTACATAAAAGAAAACACGCCACCGGGAACCCTCATTCACACAGTGTCAGCAGTTGACAGAGATTCAAATGAAAATGCTGAAATTTCTTACTCTATTGTGGATAACAAAGCAACAAGCATAAATGCTGTTAGTGTTAACTCATTAACAGGCCAGTTGTATAACCTACAGTCTTTCAATTTTGAAGAACAGAAAACCTTTAGTTTCCATGTTCAGGCCATAGATGCTGCTAAATGCTACAGGACAGACGGCAGTTTCAGCAGGTACAGCGCTCCAGTGATCAGCACCCATCCAGACGGAAGCTGGTCCTACTCCAAATCAACGCAACAGTATGACATATGTTTTAGCTCAGACACAATGAAGAGCGACATGGTGGTTTTTCCTTCGCCATTTCCGCCTGCAGAGGCCGAACTGGTCAGCATTCATGGAGAAGATACTTTTACACAAACCCAAACTCTTCCTACCACTGGGAAGTTAGTCATGCCTCTTGAGTCTTTTTTCCTAGAGGACAGGGATCAGGGCCTGTGTAAATTTCTGTGCAATTGGGTCAGTACTGGGTTCTGCTTTGCCCGGCTGGTTGAGGGAGATAGATGGATTAGAAGTCTGTGGGTCTCTGGGCTGCTGGAGTGCTGCAGTCCCACCTGCATTATATCGAATTCTCTCAAGCCCCTTTTCACTCACTGCATTAATGAGAGGGACGTGCTGCAGACTCTATGAGAAAAAGACACAGCAGATTTTATGCTGGTTAAAGAAACTGGTCCTCTCTTCCCTGTACTGTGCAACCCATTTCATGCTGCTGTGCTTACAGTATGTTTTTATTTGTTCTTTAA

Function

NR:

description
Pcdh2ab12 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09401866_09405032.mRNA True 1777 mRNA 0.42 3 9401866 9405145

Neighbor

gene id symbol gene type direction distance location
CI01000304_09395317_09401634 PCDH2AB2 coding upstream 232 9395317 ~ 9401634 (+)
CI01000304_09391007_09394640 NA coding upstream 7216 9390893 ~ 9394650 (+)
CI01000304_09384297_09390124 NA coding upstream 11672 9384297 ~ 9390194 (+)
CI01000304_09380606_09383014 PCDH1A3, PCDH1A4 coding upstream 18852 9380606 ~ 9383014 (+)
CI01000304_09367881_09372547 NA coding upstream 27621 9367471 ~ 9374245 (+)
CI01000304_09415682_09436716 NA coding downstream 10001 9415146 ~ 9437812 (+)
CI01000304_09439203_09444240 PCDH1G2, PCDH1G3, PCDH1G1 coding downstream 32785 9437930 ~ 9444726 (+)
CI01000304_09445257_09456640 PCDH1G2, PCDH1G3 coding downstream 39619 9444764 ~ 9456914 (+)
CI01000304_09457224_09468602 PCDH1G18 coding downstream 51923 9457068 ~ 9468909 (+)
CI01000304_09471237_09479915 PCDH1GC6, PCDH1G29, PCDH1GC5, PCDH1G22, PCDH1G26, PCDH1G33, PCDH1G30, PCDH1G31 coding downstream 66092 9471237 ~ 9480130 (+)
G423753 NA non-coding upstream 72227 9329053 ~ 9329639 (+)
G423809 NA non-coding upstream 98790 9302829 ~ 9303076 (+)
G423803 NA non-coding upstream 108703 9292803 ~ 9293163 (+)
G423747 NA non-coding upstream 114417 9284128 ~ 9287449 (+)
G423799 NA non-coding upstream 120433 9281232 ~ 9281433 (+)
G423826 NA non-coding downstream 112726 9517871 ~ 9518357 (+)
G423843 NA non-coding downstream 115337 9520482 ~ 9520813 (+)
G423848 NA non-coding downstream 122831 9527976 ~ 9528197 (+)
G423836 NA non-coding downstream 161276 9566421 ~ 9567016 (+)
G423614 NA other upstream 452444 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 729311 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1166906 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 1421131 7979078 ~ 7980735 (+)
G421435 NA other upstream 1917178 7484141 ~ 7484688 (+)
CI01000304_09564068_09565679 HRH2B other downstream 159460 9561005 ~ 9565778 (+)
G424246 NA other downstream 715254 10116343 ~ 10127322 (+)
G424251 NA other downstream 783677 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 1150141 10555216 ~ 10572164 (+)
G425718 NA other downstream 3023560 12436554 ~ 12436605 (+)

Expression


Co-expression Network