CI01000304_09471237_09479915 (PCDH1GC6, PCDH1G29, PCDH1GC5, PCDH1G22, PCDH1G26, PCDH1G33, PCDH1G30, PCDH1G31)


Basic Information

Item Value
gene id CI01000304_09471237_09479915
gene name PCDH1GC6, PCDH1G29, PCDH1GC5, PCDH1G22, PCDH1G26, PCDH1G33, PCDH1G30, PCDH1G31
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9471237 ~ 9480130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09471237_09479915.mRNA
ATGATGGAATCTCTTTTCTTTTTGAGGAGAATTTGGTGGTGCTGTGTCTTTATTCTTCCTTGGAGTACAATAGAGGCGCAGATTCGATACACAATTCCAGAAGAGCTAAGAGAAGGATCTGTGGTTGGAAATATCGCTAAAGATCTAGGTTTGGACGGGTCTAAGATTATAGATCGTAAACTACAAATAGCATCTGAGACTGGTAAGCAGTATTTCGCTGTGAATGTGGAAAAGGGTGATCTTATTGTGAATGAGAGAATTGATAGAGAGGGTTTATGTGGATACAATGTCCCGTGTGTTTTGCCTCTTCAAGCCGTTTTAGAAAATCCTCTGCAGATGCATCGAGTTGAGATTGAAGTACAAGATATTAATGACAACACGCCGAATTTTAAATCTAATGAGCGTATATTGAACATTCCAGAATCTATTAATTCAGGAGCAAAATTCCTTTTAGAGAGCGCTATTGACTCAGATGTACAGTCAAATTCTTTAAAATCATACAGTCTGAGCATAAATGATAATTTCGTTTTAAACGTAAAAACTCAAGATGCTGTCAAAATCCCAGAACTAGTACTCAAGCAACCTCTTGACCGAGAAAAACAGGCTGTCCATAAGCTAATATTAACGGCAGCTGACGGAGGGAATCCAGTGCGCACGGGCACATGCGAGATCACTGTTGTAGTTTTGGATAACAATGACAATGCTCCCGAATTTGAAAAGCCTTTCTATGAGACTGTTGTTGATGAAAACGAATCAAGCCATAAAGAAATTTTAAAAGTCAAGGCTATAGATTTAGATGAAGGGTTAAATGGAGAGATTGAATATTTTTTTGCAGACCAAACACTAGATACAGCATTGTTTAATATTAACCAACAAACTGGTGTCATAACAGTTAGAGGACAACTGGACCATGAAAAAGCAAGCTTACATAAATTTGATATAGTTGCAAAGGACAAAGGGAATCCTCAAATGGAGGGTCACTGCAGTGTAAAGATTAAGGTTAATGATGTAAATGACAACGCACCTGACATAATCATAACTTCTCTCTCAAGTCCAATTCCTGAGAACTCCTCAAATGGCACAGTCGTTTCATTAATTAGTACAAAAGATGCAGATTTAGGAGAGAACGGGAAAGTGAAACTTGCGTTGGCTCCTGGGACACCGTTTAGATTGAGCCCTACAGTTTCCAATCATTACGCGCTAGTTACTAACGGTCCTCTAGATAGAGAAACTTATTCTGAATATAAAATTGAATTAAACGCTGTTGATGCTGGTTCGCCACCGCTGTCTAGTGGGAAAACAGTCACAATCGGCATTTCAGACGTAAATGACAACCCACCAATGTTCTCTGAGAAGTCTTATACGGTTTACGCTAAAGAAAACAGCGCTCATGACTCAATATTGTGCTCAGTATCCGCGCATGACCCAGACTTGGGCGAAAATGCTAAAATCTCCTATTCCATTTTGGACTCTAAAGTTCAAGACGTGCCTGTATCTTCTTATATTTACATAAACGCAGAAAACGGCAGCATATTTAGCATGCAGTCATTTGACTATGAGAAAATCAAAGTGTTTCAGATCCTCGTTCAAGCTAAAGATCATGGCTCTCCATCTCTGAGCAGCAACGCCACTGTTCACGTGTTTATTCTGGACCGGAACGATAACGCACCTGCTGTCATTTACCCGTCCACATCCATGGGGTCTGTTTCTCATCAGAGGATGCCCCGTTCTGCTAAAGCAGGACATCTCGTTACTAAGGTAACAGCAGTGGACGCGGACTCGGGTCATAACGCCTGGCTCTTCTACAGGCTCGCGGAGGCCACGGACGCGTCACTGTTCAGTGTGAATTTGCATACGGGAGAGGTGAGGACTAAACGCGCTGTTTCAGAGCAGGATGACTCCTCTCAGAGACTGATGATAGAGATAAAGGATAATGGAGAACCGATCCAGTCCACCACAGTCACAGTGGATATATTGATAGAGGACGGGTTTCATGAGCCCATCTCAGACTATCGTGAGAAAACTATCGAGCCCAACAAGAAAAGCGGTAAAATTACTTTATATCTGATCATCTCTTTGGCTTCTGTGTCCTTGTTGTGTCTGATGACGTTTTTCATCTTATTGGTGAAATGTGCGCGAGGCAGTAGAGGCGGCTCAAGCTGCTGTATCAGGAGAACTGATTCTGGATACAAGAACCCCAACAGAAACCTGCAGATCCAGCTCAACACTGACGGGCCCATTAAGTATGTGGCCAGCTCAACACTGACGGGCCCATTAATTTTATCTTTGTTGACATTGTTCACGTTGATTGTAAAATGCGTTAGAAACAGCATCGGAAACTCAAGCTGCTGTATCAGGCGAACCGATTCTGGATACAAAAACCCCAACAGAAACCTGCAGATCCAGCTCAACACTGACGGGCCCATTAAGTATGTGGAGGTTCTGGGAGGAGACATGATGTCTCAGAGTCAGTCCTTTGGCTCCTATCTCTCTCCAATGTCAGAATTCAGTGATCTCACCCTCGTTAAGCCCAGCAGCACCACAAACTTTACAGACACTCTAAATGTGCTTGATGCGTCATTACCAGACAGCGCGTGGACGTTCGAGAGCCAACAGAGAGTGGAGGAGACGTAGACACAAACTGGTATGTTTCAGCACCAATATTCTGGACAGCGACCACTATGTCTATATTGCGACTCATGCACATGTGTGCATCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCAGTTCTTAAAAATAGCTTAAAACAAGTGCAAGTCTGAGAAGGCTGTAGAAGATACACTGAA

Function

symbol description
pcdh1gc5 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and female organism.
pcdh1gc6 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain.
pcdh1g26 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.
pcdh1g29 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain.
pcdh1g30 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain.
pcdh1g31 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain.
pcdh1g22 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.
pcdh1g33 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16497 PCDHGC; protocadherin gamma subfamily C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09471237_09479915.mRNA True 2849 mRNA 0.42 3 9471237 9480130

Neighbor

gene id symbol gene type direction distance location
CI01000304_09457224_09468602 PCDH1G18 coding upstream 2328 9457068 ~ 9468909 (+)
CI01000304_09445257_09456640 PCDH1G2, PCDH1G3 coding upstream 14323 9444764 ~ 9456914 (+)
CI01000304_09439203_09444240 PCDH1G2, PCDH1G3, PCDH1G1 coding upstream 26511 9437930 ~ 9444726 (+)
CI01000304_09415682_09436716 NA coding upstream 33425 9415146 ~ 9437812 (+)
CI01000304_09401866_09405032 NA coding upstream 66092 9401866 ~ 9405145 (+)
CI01000304_09481220_09484457 PCDH1GC6, PCDH1G26 coding downstream 1090 9481220 ~ 9484546 (+)
CI01000304_09484625_09487668 PCDH1GC6, PCDH1GC5 coding downstream 4495 9484625 ~ 9487692 (+)
CI01000304_09488898_09490778 PCDH1G29, PCDH1GC6, PCDH1G30 coding downstream 8411 9488541 ~ 9490968 (+)
CI01000304_09491577_09494024 PCDH1G31 coding downstream 11447 9491577 ~ 9494024 (+)
CI01000304_09494392_09503344 PCDH1G32 coding downstream 14262 9494392 ~ 9503588 (+)
G423753 NA non-coding upstream 141598 9329053 ~ 9329639 (+)
G423809 NA non-coding upstream 168161 9302829 ~ 9303076 (+)
G423803 NA non-coding upstream 178074 9292803 ~ 9293163 (+)
G423747 NA non-coding upstream 183788 9284128 ~ 9287449 (+)
G423826 NA non-coding downstream 37741 9517871 ~ 9518357 (+)
G423843 NA non-coding downstream 40352 9520482 ~ 9520813 (+)
G423848 NA non-coding downstream 47846 9527976 ~ 9528197 (+)
G423836 NA non-coding downstream 86291 9566421 ~ 9567016 (+)
G423867 NA non-coding downstream 89888 9570018 ~ 9570273 (+)
G423614 NA other upstream 521815 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 798682 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1236277 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 1490502 7979078 ~ 7980735 (+)
G421435 NA other upstream 1986549 7484141 ~ 7484688 (+)
CI01000304_09564068_09565679 HRH2B other downstream 84475 9561005 ~ 9565778 (+)
G424246 NA other downstream 640269 10116343 ~ 10127322 (+)
G424251 NA other downstream 708692 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 1075156 10555216 ~ 10572164 (+)
G425718 NA other downstream 2948575 12436554 ~ 12436605 (+)

Expression


Co-expression Network