CI01000304_09564068_09565679 (HRH2B)


Basic Information

Item Value
gene id CI01000304_09564068_09565679
gene name HRH2B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9561005 ~ 9565778 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09564068_09565679.mRNA
GTATAAAATAACCCACATTGACAAACATCCCAGAGTGTTTATATGGATGTCAAAGGAATACATGAGATTGCCCATGCAGCAAGTATGGTCTCTCTATATTTCTCACTTGTGCAAACATGTCTGGTGCTGTAAAATCCACATGGATACCAATGGCATACTGATTATGTGCTTGCCTCCCTTTACAAGTATCTGTTCAACCCACTGTCATCTTCTACTGTGATTTTATCTTAACAGCGTTCATCATCAGCAACTAATGTAGCTTTGAATGCAAAGTAAAAGAACCCCACCACTAAATATTAAAAACAAACAAGAGAAAAAGAAATAAGCTACAACTGAGAGAGCTATCTGATTCTCTGAGATCTTGTATAATTTAGGCCTTTTTGTCCTTGCAGTAAACAGGGGATGAAGTTTTGCATTAAATTTGCATTCAATTAAGATTCAGATTTGCATTCATTTTTTTTTTTTTTTTTTTGGTGACCTTCCAGAAGACATAATACCACACCATATCAGACAAGTGCATTCATTAACATTTCTTTGTGCTAACACATATGTTTCAAAATATGAATGGCAGAGAATAAGCCAACCAAGGCTCATTGGAAAAACATGCCTTTGACGCCATTTCTGCAAAATGACAATATGTTGCTCCTTGCACTTTTTGTGACACTATAAAAGTAAAATGTCCAGTGAGTGACAGAATCATGTTCAGGTTCATTCGAAACAGATGAATTTTGCAACGTTTTATGTTAATTTGTGTTAGTTTTTGTACGTAACATGGCAAGTCTGAAATGAAATGTCTGGTGAGTAGTGTTAAAATGCTCTATCGCGTTTGAAAAAAGTAACATACGATACCACCTAGACTAAACCATACCCTAAACCTAACAATGTTATCAAAAGCAAACATGAAATAAAAATGCATTTTCTGAAGAAACCATTTTAGCTTGCTTCTACAATTCTTTTGAGGTCTTTTACTGTGACTTTACAGGTGAGCTACAGTACCAAGCAAGTTTACTACGACAGAAAAGCCACATATATGGAGCTGATTATGTGTTGTAAATGTCACGCTTGCGAGGTGTTTGTATAATTTATTATATATGAAGTGGATTAGATGCAAGATTTGTCAAATACACAGAGCTCTCAGACGTTTTCATGAAGGAACAGAAACACGTTTCTTTCAATACTTGATGTACTGTTAATACAGAGCCATATGTACTAGTAAAGTTCGACATAAGCCTATACTATTTAAATACCAATAAAGTGGCTCTACGCCAAAAAGCTTCTTTTTTTAGTTTTATTTTGAAAACATGACACAAAATAAGATTATGGTTAGATGAAAAGTGAATTTGTGAGCATCAGCTGAGCTGAATGTGTCAGAATAAACACAAAACACATGTGATCATTGTCTTCGGTGAATCCGTCAGAGCTCATGTATTTGGGGCAACTGCAGCATTTGACCCAGGCGGCTGGTCTCGTGTTGCTCTCAAGTTACTTTGATGGCACATGCTCAAAGTCGGACAAACTTTCTAACCAAAATACATTGCGTTTGTTATAGGCACCAATCGGTCTGCGCAACGCCGCATTAAGTCAAACTAATGCTACAACAAATACTAAGTATGCTATTACATTCAAAAATACAATCACATGCTAATGACTGGTTCGAAACAAATGATTTTCAGAATTTTCAAAGCTTCACAAAGCAGTGTTTTGAAAGTGCCCATCACTTGATAGAGACATATTTTTCCAATGAGCCCAGGTTTCAATAAACTGATGAAGGCCTGGCTTTCACACACAGGGCTTAGATTAAGCCAGGATTAGGCCTTAGCTCAATTAGGACATTAAAGCAGATTTTATAAACGTGCATTTGAAAAAAAAAAAAAAAAAAAAAAAAAACATTAAAAAACATTACTGGTATGCATTTTGAGACAAAACAATGGCACTGACATATTTTAAGATACGTCAGTGCAAGTTGCTTTCAGTTGAAACAGCTCAAACATGCATTTTAGTCTGGGACTAGGCTTAAAGTGTTAGTTCACCCAAAAAATGAAAATTCTGCCATTAATTACTTACCTTCATGTCGTTTCACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTCATAAAATCCGATGGTTCAGTAAGGACTGCTTGCCAGCAATACAATTAACACTTTCAATGCCCAGAAAGCTACTAAAGACATATTCATGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGATGAGAATACTTTTTGCGGAAAATTATTGAACAATATCTAGTGATTTCAAAACACCGCTTCATGAAGCTTCGAAGCTCTATTAATCTTTTGTTTCGAATCAGTGGTTCTGAGCGTGTATCAAACTGCCAAAGTCACGCCCCCCAGTGGTGAACCATTGCAATTTCGAAACACTTACCACGTAACGAAGCCTAGTTTACTGAAATCACGTGACTTTGGCAGTTTGATACGCGCTCCGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGCCTTGTTCGTGAAACCAGGGAAAATGTCCACCATCTAGTCAAAAAAAATTATTGTTTTCAAATAATGTTTCTAAATATGCTCCCAACTACAATTGGTTGGTCAAAATGGATAGCCCTTTCAAACTTATACCATTGGTAGAGTTAATGCGGGAGGGGGGTCGAGAATCTGAAGCAAATGTTTTGAAGGCGCCTCAGTGTTATACTTTTCAAATGAACCTACAGCTGTAATTGCATTTTAAACTGGGATGGGATGAAATACTGTAACATTTGAAGTATTATACATTTCACTTTTACTAAAGGTACCCAAAATGGCTGCTTTTTCCCTATAACCATGTTCTTTTTCTTGTAGGAATGAACCTGGGCTGATATCTGAGCAGTAGCAGTGTTATAGCACCCAATGTAAATGTTTGAGAAAAACAGATGACACGTGGAGTCCTGACTAAACTAGTTTGGATATCACTTTGACATAGGAGGACAAAATTCTCCAATCTTTCCTGCTTAAGCAGCTAACAATGACGTTCACTTCCCTGCGTTGGGTGGTATTGGTGGCCTTCATCGCTCTGACCATTTGTGGAAACGTGCTGGTTTGTCTGGCTGTGGCCACCAGTCGGCGTCTTCACCAAATTAGTAGCTGTTTTATACTATCACTGGCTGTGACAGACTTGCTGCTGGGTTTGCTGGTACTGCCCCTCTCTGCCATGCTGGAATTACGCAATGGGAGATGGCCTCTCGGAGGTGTTTTTTGCAACATCTACATCTCTCTGGATGTAATGCTCTGCAGTGCTTCAATCCTCACTCTACTAGCCATTAGTGTTGATCGTTATCTTGCAATTTCCAACCCACTCTGCTATCCCAGGAGGGTCACACCTAGGCGGGTTGCGATCACTCTGACCGCAATCTGGACATGCTCTCTGGCTGTGTCCTTTGTGTCTATTAACCTAGGCTGGAACACACCTGATTTCAGAGTGCAAAACCTGGACTGGAACATGTGGGATGAAGGAGAGGAAGGCAGGACCTGCCGCTATGAATGGAATAATAATTATGTGCTGCTGAAAGCATTTGGAATCTTCTACCTCCCTCTGCTGGTCATGTGTGGAATGTACCATCGAATATTCTGTGTTGCACGTGAGCAGGTGCGTCGTATACGGGCAACCACTCCTTCGTCTGCTCAGGCTGCAAATGCAGTTGCCACTGCACGGGAACACAAAGCCACAGTGACCCTGGCTGCAGTGCTTGGTGCTTTTGTCATTTGCTGGTTCCCCTATTTCACCTACTTCACATACACGGGGATGTGGGCAGAGACCCATCCAAACAAACTGACTCACTCTATCGTTCTTTGGTTGGGATACCTCAACTCTGCACTGAACCCCATTCTCTACCCAGCCTTAAACCGGGATTTCCGTGGGGCATGCGTACAGCTGCTCTGCTGTAGACGCAGCAATCAGGGGGAATTGCCTTTTGTTCACCCCTTCTAAAAGAAACAGACTATAGCTATACAATGAAATGCAGTGGTCTATACCAGGACTTGTCTCGCACTTTGAGAGATCAACTGCAGTGAATGCATTTTACATTAA
>TU486746
CTGAAAGCATTTGGAATCTTCTACCTCCCTCTGCTGGTCATGTGTGGAATGTACCATCGAATATTCTGTGTTGCACGTGAGCAGGTGCGTCGTATACGGGCAACCACTCCTTCGTCTGCTCAGGCTGCAAATGCAGTTGCCACTGCACGGGAACACAAAGCCACAGTGACCCTGGCTGCAGTGCTTGGTGCTTTTGTCATTTGCTGGTTCCCCTATTTCACCTACTTCACATACACGGGGATGTGGGCAGAGACCCATCCAAACAAACTGACTCACTCTATCGTTCTTTGGTTGGGATACCTCAACTCTGCACTGAACCC

Function

symbol description
hrh2b Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human HRH2 (histamine receptor H2).

NR:

description
histamine H2 receptor

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04150 HRH2; histamine receptor H2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09564068_09565679.mRNA False 4125 mRNA 0.40 2 9561005 9565778
TU486746 True 320 TUCP 0.51 2 9564605 9565573

Neighbor

gene id symbol gene type direction distance location
CI01000304_09532680_09535197 NA coding upstream 24574 9532680 ~ 9536431 (+)
CI01000304_09529802_09531061 NA coding upstream 29701 9529391 ~ 9531304 (+)
CI01000304_09494392_09503344 PCDH1G32 coding upstream 57417 9494392 ~ 9503588 (+)
CI01000304_09491577_09494024 PCDH1G31 coding upstream 66981 9491577 ~ 9494024 (+)
CI01000304_09488898_09490778 PCDH1G29, PCDH1GC6, PCDH1G30 coding upstream 70037 9488541 ~ 9490968 (+)
CI01000304_09683383_09690928 KCNIP1B, KCNIP1 coding downstream 117605 9683383 ~ 9690941 (+)
CI01000304_09692774_09694613 NA coding downstream 126996 9692774 ~ 9694613 (+)
CI01000304_09695997_09696577 NA coding downstream 130219 9695997 ~ 9697143 (+)
CI01000304_09757695_09760278 NA coding downstream 191315 9757093 ~ 9760699 (+)
CI01000304_09879900_09938234 NLGN2, NLGN2A, NLGN2B coding downstream 314076 9879854 ~ 9939321 (+)
G423848 NA non-coding upstream 32808 9527976 ~ 9528197 (+)
G423843 NA non-coding upstream 40192 9520482 ~ 9520813 (+)
G423826 NA non-coding upstream 42648 9517871 ~ 9518357 (+)
CI01000304_09457224_09468602 PCDH1G18 non-coding upstream 98067 9457068 ~ 9468909 (+)
G423753 NA non-coding upstream 231366 9329053 ~ 9329639 (+)
G423836 NA non-coding downstream 643 9566421 ~ 9567016 (+)
G423867 NA non-coding downstream 4240 9570018 ~ 9570273 (+)
G423841 NA non-coding downstream 13797 9579575 ~ 9609161 (+)
G423842 NA non-coding downstream 92468 9658246 ~ 9659272 (+)
G423876 NA non-coding downstream 93930 9659708 ~ 9660158 (+)
G423614 NA other upstream 611583 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 888450 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1326045 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 1580270 7979078 ~ 7980735 (+)
G421435 NA other upstream 2076317 7484141 ~ 7484688 (+)
G424246 NA other downstream 554621 10116343 ~ 10127322 (+)
G424251 NA other downstream 623044 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 989508 10555216 ~ 10572164 (+)
G425718 NA other downstream 2862927 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 3990673 13578049 ~ 13595097 (+)

Expression


Co-expression Network