CI01000304_09577749_09578512


Basic Information

Item Value
gene id CI01000304_09577749_09578512
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9576119 ~ 9578512 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09577749_09578512.mRNA
ATGGGTCCCATCCAGTGTGCCGTACACCTGTGGTACAAGCTAAAGATTGGAAATAACCGCTGGTCGGCGCGTCTGCTTTGTTTTGACTATGATGTCGTTTACAAGCCAGGTTCACAAAACCATACAGCAGACTGCCTTTCACGTCTCCCTCTGGATGTGCCAGCGGATCCTTCCACAGATATGGAACCTGAACTTGTGGCTCTGATTTCTTCCACACTGAGTTCCCTTCTGGTCTCTGACTTTGACAGTGCTTGTTCCTCATGCTCAGAAATGGTGGCTCTTCATGAACAGATTAGCCGTGGCTGGCCTCCATCTATACGGGCTGTTGCCCAGAATCTAATGCCCTACTACAAAATTAGGGATGAACTCTCAGTGCAGGGTCATTACATCTTCCGTGGTTCCAGATTAGTGGTGCCTGTCTCATTGCGTCATACACTGATCACCCTGTCCCATGAAAGCCACCAGGGGATCGTACGCACTAAATAGCGTCTGCATGACCTTTACTGGTGGCCTTGTATGGACTCTCAGGTTCAGACCTGTATATCTGCCTGTGCCCCTTGTCAGTCTAACAACAAAACAGCTCTCACTCATCCAGCGCCTCTACAACCTGTTCCACTCCTTGACGGTCCCTGGAAGAAATTAGGCCTCGATATCGTTGGGCCATTTGAGACTGCCATTCCTGCTAGTCGGTATGCTGTGACATTGACCGACTACTATTCAAAGTGGCCTGAACTTGCCTTTTATCCATCTGCCACAACTGACGGTGTCATAGATTTTCTGACCACCGTTTTCAGTCGTCATGGAAATCCGGAAAGCATTGTCACTGATAACGGGACGCAGTTCACATCAGCTGCCTTTGCTGAATTTCTTTAATTTCTTAACTGCTCTATGGACGTAAAATGCGAACCAGACTGGACATTTTGCCCATTGCTCCTATGTCGAATTCATCTGTCCATGACACTGTGGAAAGGAAACAAGCCAAGATGAAACAGTACAAACAGTACACTGACATTAAGCGGCATGCATGTACCCCGTCTTTTGCTCAAGGGGAGAGAGTGAGGGTCAGAATTCCTCACTTAGTCCCTAAAGCACACTCCAGATTCTCTGCTCCGTTAACAGTGGAAAAGCGTGTGAGTCCAAACACTTTTCTGCTAAGTGATGGGAAGAGATGGAATGTCACACACTTGGCTCGTTCTCATTCTGCGCCCAGAAGTGGAGGTCAAGTTGATACACCAACTTGCACACAACCCATTCAGGGTACTTCTCCAAAACAGCCACGTATTAGATTCAAACCTAAGTGGCACAAAGACTATGTAATGTAACTGATTGAGATTTGAAGGGTTAAGAACAGTTTTTTTAGTTGAACCAAGCTGTAAAAGAAATGTACTTTAAAAAGTGTTCTGAGTTTCATGAACGTGAAGACTTTTGACTGCCATATGTTAGTTATGTTAAAACAGATGTCACCTTCTTTTGTAACTACAATTGCAGCCTTTATTTCAATAATTTCATAATACGATCAGTGTTCAGTTACTGAAGTAGTTTTCTTAACAGAGAGGGAAGATGTTGTGTTCTGTGAATCATTGTGATACTGAGTATGGTCGCTAGAGGGCAGTAAAACCTAATAAGAAACCTAGAGAGGTGATGAAGAAATTGAGTTGTTGATTTGCTATGGTAATGTTTACTGATGCTTCCTACATTAAAGACAACCGTTTGGAGCTAGCTTTTCTTTTCATTCTTTTTTACATCTTACAACACCACAAGTGTGCATATAGTATGGGACGTCCCCTAAGAAGTGGCCTTTGTTTTTATCAGAAATAAGATCTTTATAGGCCTCTTAAGTAGTAAAATGTGACTTATTTTACAAAACGCTGGAGTAAAATGTTTTCATATGAAGTGTGCATACAGTATGGCAGATTGAATTCAAGAGAAACTGTCATTTTAATACTATATAAAAAAAAAATATATATGAAAAAGAGGTATTAAGTGTATACTTTATTTTAGTTTTTTTTCTGCTTTTTGCAAATAATTTTGCTGTAAACCATAAAAATGTCTTGAGATGTGACCTATAAAGAAAGAAAAATACACAACTGTCAAAGACAACGTGAGAGTAAATAAA

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09577749_09578512.mRNA True 2116 mRNA 0.42 2 9576119 9578512

Neighbor

gene id symbol gene type direction distance location
CI01000304_09566730_09575706 NA coding downstream 413 9566730 ~ 9575706 (-)
CI01000304_09508090_09519201 NA coding downstream 56786 9507297 ~ 9519333 (-)
CI01000304_09342385_09345935 NA coding downstream 230184 9341854 ~ 9345935 (-)
CI01000304_09284328_09286980 AVD coding downstream 289087 9284189 ~ 9287032 (-)
CI01000304_09046090_09129612 PCDH1 coding downstream 446507 9046090 ~ 9129612 (-)
CI01000304_09609674_09619712 NA coding upstream 30998 9609510 ~ 9620030 (-)
CI01000304_09622805_09640521 NA coding upstream 43864 9622376 ~ 9640540 (-)
CI01000304_09699524_09703985 TLX3B coding upstream 120856 9699368 ~ 9706659 (-)
CI01000304_09720695_09725068 UGT5G2 coding upstream 141764 9720276 ~ 9725068 (-)
CI01000304_09726631_09727403 NA coding upstream 147435 9725947 ~ 9730308 (-)
G424181 NA non-coding downstream 13030 9562722 ~ 9563089 (-)
G424162 NA non-coding downstream 44795 9529683 ~ 9531324 (-)
G424158 NA non-coding downstream 55718 9520143 ~ 9520401 (-)
G424052 NA non-coding downstream 72808 9499007 ~ 9503311 (-)
G424065 NA non-coding downstream 78526 9471070 ~ 9497593 (-)
G424187 NA non-coding upstream 66985 9645497 ~ 9645723 (-)
G424188 NA non-coding upstream 67302 9645814 ~ 9646065 (-)
G424190 NA non-coding upstream 71149 9649661 ~ 9649877 (-)
G424170 NA non-coding upstream 79818 9658330 ~ 9659287 (-)
G424196 NA non-coding upstream 81071 9659583 ~ 9660325 (-)
G423386 NA other downstream 710823 8862223 ~ 8865296 (-)
G422810 NA other downstream 1923416 7630159 ~ 7652703 (-)
G422378 NA other downstream 2793073 6744679 ~ 6783046 (-)
G422354 NA other downstream 2944620 6631086 ~ 6631499 (-)
CI01000304_09737662_09738777 NA other upstream 158234 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 574934 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 612062 10190574 ~ 10192357 (-)
G424808 NA other upstream 865843 10444355 ~ 10542665 (-)
CI01000304_11338304_11348212 ILK other upstream 1768508 11338019 ~ 11348212 (-)

Expression


Co-expression Network