CI01000304_09726631_09727403


Basic Information

Item Value
gene id CI01000304_09726631_09727403
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9725947 ~ 9730308 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_09726631_09727403.mRNA
AGAAAAAGGAAAGGTTGCACTAGAAGTACAAGTAAGTAAGTAATTTCTTATCTTTCCTCATTTTTTTCAGCATGTTAAATCAAATGTTTACACTCTGTTACAGTTGCACTCTGACTGTGGCTGTCTTTTCAAAAATTGAAAAGATGAGAATTTTTAGATATTTTTTAGAAATTGTTTTCCGAATTTTAAATGTTTCCTATTTTAAAATGTTTGTCTTCTATACTTGTATGCTAGATGCTATATTTATTTAATTTGTGTGTATTGGTAATTAGTCTATTTTCTTTTTGTAAATTACTTTGCAAACCTAGATACAAAACCAGGTCACACTATTGATAAGTTTGCACACTGATTATGGGTGAAATTCATAAGTCATTAAATCATCTGTATATGTTAACACTTTACAATAAGGTCCCATTAGTTAATGCTAGTTAATGCATTACCTATGTGTAATACATTTGTTACAGTATTGATTAATCTTTGTTAATGTTATACAAATACAACTGTTCATTGTTAGTTCTTGTGAGCTCAGGTCCATTAAATAATGTTAACAGATACAACATTTGATTTTAACTATAGTAAAAGTTGAAATTAACTGAGATTAATAAATGCTTTAGAAGTCTTTTTCATTGTTAGTTCATATTAATTAATGTAGTTAACTAATGTTAACTAATGAAACCTTATTGTAAAGTGTTACCTGAATATAAAAGAAACTGTCTTATTTTGTTTTTTAAAATGTACCCAGAGCTGCAGGCTGCAAAAAACTTTTCTTTTTCTTTTTTTTTTCTTTTTTTGTAAGATTAAAATAAAATCTTAAATTTCACAATGCTGCATTCCATATTTCTTTGAATTTAAACAATCTTTAACTAATTTATCTTCGAAAGATTTAGTGATTAAACATTTCTCTGATCATTACTCAAAATATTTGAGAAGTTATTAATAACAGACATTTGAGAATAAATGAAAATGTAACATCTTGCCACATAGCTGTTTTTGTGATAGTTCTTTGCTCTACATTCATATACATTTATTGTTCTTACAAGCTTTAAAGGAAAAACAAACAAACAAAACCCAGTGGAACCGGTTCATAGGAATATATATATATAGGCAAATTTTCAATTTTGAATATGAAACGAAACTCTACATGGATAGTTTGGTGAGACTTGCCAGACAGGGTCATTAAAGCAAACAGTTTCATTTTGAACAGTGTTGCAAAAGGTGACCTGAAAGTTTAGCAATGCAAACAAATTTTTTTTGAATAGTACCCAGCATGCATTGCTGTATGAAAAAAATAAAATGACTTCTATTAAAAGGATTAATAACCAATTAGAACTTCTTGCATTACTAAACCTCAATATGCCTCATTACATTATACAAAATTTTGTAACACTTTATTTTAAGGTGTCTTACAAAATTTACCCTTCGCCGGGAATTTGATTGGCAGGCAATCTGACCAATCATGACACTGAATTCGCCATTTTGTCTGACAAACAAACACAGGATAGTTAATAAATTAACGTTGTGGACTTGAACTTGGACTTGAAAAATGGTGTGTATTAATGTCTTTCTGTGGTTGAAAAAAACATACCTTCTAATGTTAATTCATCACTAGTAGGAAGAGATGACCGGTTCACATGCCGCTTGAACTGAGGCACTACAGCGATCTGTCACAACACATTAAAGAGCCAAAAAACAGTATTAATTTTTTGAATTTCTTAAAAAAATTACAAAATTTGAAAGCTGAGACTTTATTTCACACCATAAGTAACCTGCTTTGTCTTGTTTGTCAGCGCGTTGTCAGTGTCCTCTTTGCTCTGCGATGTATTTTTCACTTTGTGAGAACATGATATGTGGTGTGAGAGCGGCTTGTCGGACAAAGCAACAGTAACTAAGGACTCAAGGTGCAGGACAACAGGCATTTATTTGTTATAAAAAAAAAATAAAAAAATTAAACAAAAACCCTGTAGGGGAAAACACTGGCAGCAGGACCAGACAGGCAAGAGTGGAAATGGCAAGACAAGGCAGGACAAGACACGATGGGTAAATATGACAATGAACTGGCACAGGATTGAAAACACAAGGAGAATAAATAGGGAGCAAACAAAGCAGGCAACAAGGGAGGACAGGTGGGGCAAATGAATCAATAATCAGATAACAAGAAGGATGGGGTTAAGACAATAGACAGGAGAGCACATGGCACAAAGAAACAAACATGACAAGCCATGTGCTCACTCATACCAAACATGAACACGGAGACACTGAGAGCTCTCACTGACTGCATGTCCATACTGAACATGACAACAAGAAATCATGCGGCCGAAATAAACACAAACCGCTTGCTACACAGAACACAACACACACGCGGACAGAACAGCGTATGGCCCTAGCAAATTCAAAACTGCATGCTCAAGTCAACTGAAGACACAACAGAAGACAAACACACGGAGCATGAATGTCCGAACTCTGACACAGAACCAAAACCCAACTAGACCGAAATGTCGGGTTCTAAATACCACGCGCCACACACAAAGCAACTCGCATGGACAGAAGAGCGTACGGCCCGAGCGAACTCGGAAATTCTCACAATGACAGAAGGAGTGTCAGAGCTCTGTCACCAAACCAAGAATAAACAGACTGAAGAGACAGAACCCTAACATAGGGTTAGTTGCATGCAATGTGTAACGAAGGCTCTGTAAAATAAAGTGTTACCCAAAATTCTTTAAATTCTTAGCTTTATTTGAGTTGGGTCTACTCCAAAAATTGCTTGTAATAAGTTATTTTTTTAAAGTGAGGTCAGTGTGGGTTTTCAGTAAAATTCAGTTTACATGATAGTTTAAAATAACAACTAGGATCAGTAAAAACCTTTCCTTTTTTTGTCATTCTTCCATATCAGTAAGGTCAAATCGCTATGGCGGCTGTAATTGTGCAGCAGCCTTTCATCAAGACTCAGAGTAATGCCTGGACTTCAGGAATATGTGACTGTTGCCAGGACTTGAATTCTTGCTGCTATGCGTACTGGTGCTTTCCTTGCTTTACCTGCTCCACCACTGGGGAGTTTGGAGAGAGCACCTGTCTACCTCTGCTGGACATATTTGGCCCATGTCTCTTGGCTTCGTTTGGGATTGCAACATGTGTGCCGCCTGTGACTCTGGGAATGAGGGTGGCAGTTCGCTACAAATATGATATTGGGGGCAGTCTCTGCGAGGACATCATGGTGTCTTGCTGTTGCATCTGGTGTTCATGGTGTCAGTTGAGTAGAGAAATCAAAGCACGCAAACAAACCGTCACCATAGTGCAAACCGCACCTACCGTGTTTCAACCAATGCCCATGGCAACCACCACACAAGTTGTCTCTACACAGCAGTCGGTTGAGATGATTCGTGCGCAACCGGTAGCAGTTGCTCCTGCAATGCAGATGGCACCAATTCAGACTGGTCCACCTACAATCATAACAACTGTTAAATAGGATATAGATGCTTGTGACACACACACACACACACACACACACACACACACATGCTGGGTTTCCATGTTTTATGGGGATTTTCCATAGACATAATGATTTTTATTATTACCTTATTTGTGGGGACATTTTGTCCCCATAACGTAGGGTTTACCAGGACCACACACACACACACACATTAGATTTTTTTATCTTTGTGGGGACTCTCCATAGACGTAATGATTTTTATACTGTACAAATTGTATATTCTATCCCCCTATACTAAACCCACTCATCACAAAAAACTTTCTGCATTTTTTACAATTTCAAATAGGCATAACTTAGTATGTTTTTAAAAAAAAAAATGTTTTAATCTATTTCCCTTGTGGGGACCGCTGGCTGGTCCCCACAATGTAGGCGATCTCTGGTTTTATTATCCTTGTGTGAATATTTGGTCCCCATAATGTAGGTTAAATGTATACACACACACACACACACACACACACACACACACACAGACCGAATACTAAGTGATCCGTATAATATAATATCTAACCTGCTTAATATAAATGATTTTGTGTGAATGGCTTGGGTGCATTTGGAAAATACCTGTCTTTATATTGTTTATTCCTTGAATATACCTATGTAATCAGACTTATTTAATTTTTTTAATTATTCAAATAATAATAATAAAAACATCTGATTAAA

Function

NR:

description
Cornifelin homolog A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_09726631_09727403.mRNA True 4147 mRNA 0.36 3 9725947 9730308

Neighbor

gene id symbol gene type direction distance location
CI01000304_09720695_09725068 UGT5G2 coding downstream 879 9720276 ~ 9725068 (-)
CI01000304_09699524_09703985 TLX3B coding downstream 19288 9699368 ~ 9706659 (-)
CI01000304_09622805_09640521 NA coding downstream 85407 9622376 ~ 9640540 (-)
CI01000304_09609674_09619712 NA coding downstream 105917 9609510 ~ 9620030 (-)
CI01000304_09577749_09578512 NA coding downstream 147435 9576119 ~ 9578512 (-)
CI01000304_09737662_09738777 NA coding upstream 6918 9736746 ~ 9738777 (-)
CI01000304_09751291_09754997 CLDN7B, CLDX, CLDN7 coding upstream 20613 9750921 ~ 9755245 (-)
CI01000304_09765626_09814386 FGF11B, FGF11, FGF11A coding upstream 35318 9765626 ~ 9814386 (-)
CI01000304_09944778_09945833 NA coding upstream 214315 9944623 ~ 9945833 (-)
CI01000304_09949821_09951564 NA coding upstream 218857 9949165 ~ 9953257 (-)
G424159 NA non-coding downstream 28624 9695733 ~ 9697323 (-)
G424169 NA non-coding downstream 30568 9694525 ~ 9695379 (-)
G424203 NA non-coding downstream 34707 9676129 ~ 9691240 (-)
G424202 NA non-coding downstream 50860 9674873 ~ 9675087 (-)
G424201 NA non-coding downstream 53900 9671744 ~ 9672047 (-)
G424217 NA non-coding upstream 13260 9743568 ~ 9744018 (-)
G424218 NA non-coding upstream 13897 9744205 ~ 9744618 (-)
G424239 NA non-coding upstream 109799 9840107 ~ 9840527 (-)
G424418 NA non-coding upstream 246951 9977259 ~ 9977486 (-)
G424448 NA non-coding upstream 303286 10033594 ~ 10036068 (-)
CI01000304_09566730_09575706 NA other downstream 156913 9566730 ~ 9575706 (-)
G423386 NA other downstream 860651 8862223 ~ 8865296 (-)
G422810 NA other downstream 2073244 7630159 ~ 7652703 (-)
G422378 NA other downstream 2942901 6744679 ~ 6783046 (-)
G422354 NA other downstream 3094448 6631086 ~ 6631499 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 423138 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 460266 10190574 ~ 10192357 (-)
G424808 NA other upstream 714047 10444355 ~ 10542665 (-)
CI01000304_11338304_11348212 ILK other upstream 1616712 11338019 ~ 11348212 (-)

Expression


Co-expression Network