CI01000304_10160458_10161768 (VAMP2)


Basic Information

Item Value
gene id CI01000304_10160458_10161768
gene name VAMP2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10160458 ~ 10163762 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_10160458_10161768.mRNA
ATTTTCATTTGCTACTACTCACATACTAAATGTGCCTTTATATATTAAATCGTTATCACGGAACTAGTTTATTTATAATGTAACGTTATATATTTTTCGCTTTATTCTGGTGTTTGGAACGAGCGACAGCGATAGAATCACGCCTAGACACCGGATTGGACTGGTTTGGCTGGAATTGGTCTCGCGCTTTTAGAAAGAAAATAATTTATGAATTGACATTATTGAAATTAATATATTTTTCCTCCCAAATCTCTCTCCAGATGATAATTTCGAGGTCATTTCAAAACCCCCCAGGAATTTGTCTCAATTAGCCCAAGGCCCACTGTATTTCATGCCTGGCCTGTTATCAATTTTTTCCACAAATGACATTTAGATGAAGACAATGAAAAATATACCTCACACGGTTTAAAAAAACAACAACAAAAAACATCCCTTAGGCTGTAAACTAGAGGCGTGATATTCCACGCGAGTCGTGGGGGTTGGTAAACGGACGGTCATATGCTCGCGTTCAGTCAAAGGGGGCGATACAATTTGTTGTATTTTTGAATTATGTTATTCTCTAATCCACCCAGCACGTTTCTATGGAACCAGGCCTTGATATTCATTGATATTTGGTTAGACTGAAGCCAAATGGCTGGCACAAAGGGCGCAGGTGTTCCTCTGCAGGAAAGATGGCCGTGTATACTATATTTTCTAGGCACGCTCGTTTAACTGGTTTTAATAATCGAGTCTGTTAATGGCGCACATTATCAATAATATGTTGCCAGTCCCTGTTGGATACTTTTATCAAGGCATCACTGGACCTGGAATGTGATATTGTGATATAACATATAATTGGGATTAATAACCTACTGTTGTTTTAAGGTTCTAGCATTTGCCACACAATGTAAAAATAGATAAATGTAATTTGGTAATAAGTGTAAACCTCTGGTCCAGTTACTTGAAAAAATTTATGTTGATTGTGACGCAACAATGACAGAGACACACGTACACGCTTAATGAAGGCCTTGTGTGGGGGTGGGGATGTTGTCCCCATCATTCATATGACCCTGCCTTTACCAGTTGAGTGTAAGGAAGAGCCCAGAAACAGAAACTATTTATTAACCTCACATTCAAGTAAAACTACAGTAAATGTACCATGCTTTCTCACTCACACATTTGGAATTTGTCAGTGAGCACCGAAAAAAGGCCTGGTTATGCAAGGCAATTTTTCTGATGGCACATTACAAATGTTTGATGTGTCATTTCATCAAACTCAGGAATGACACACGTTCCCCCGGTTTCACAGACAAGGCTTAAGCTAATCCTGGACTAAAATGCATGTTTGAGCTGTTTTAACTGAAAGCAACTTGTACTGGCATACCTTAAAATATATCAGTGCCATTGTTTTGTCTCAAGATGAACACAAGTAATGTTTTTTTTTTTTTCAATTGTACATTTATAAAAGTTTTATTAAATATCCTAATTGAACGAAGGCCTAATCCTGGTTTAGGCTAAGCCCTGTCTGTGAAACCGGGCCATTATGTTTTAAATGAGAAATTTTCATCGCATCCATCAGATAATGAAACCACAAAAATTTTGTCTACACCCAAATAAAGAACTACTGCTAATTTTGCATTGAATCATGGCTGAATCACAGACTCTTTGTTCTTAAAGCCTATAATGTATTTGCAATAAAACAGAAAACAAACAGTAATACGTTTGTTTCTGATTTGTTGAACTGATTAAAGTTGAATTACAAAGAATCATGAATTGTATTAATGGATTTTAGACGTGAAAATAAAAATCTGAGTTGCCAGAGTGTTACATTGATTTACTGACCATAAGAACCATAAAACTGATACTGATATTAAATCTTTTCCTGTCAGTGAAGGTGAGAGAAGCCAAGACCTAATGTCTAAATATAGGCTATTGTAAATGAGAAGGAGCAGAAGTAAATGAGAAAAATGGCTGGTAAATAAGAACTAAAATATGGTAAGCTTTACTCCCAGCTCATGCACTCCTTTTACATATGGAAAAAAGACGAAGAAGACCCCAGTAAGAAAAAATCTTTCCTTCCCTGCAAGGAAAGCAAACAGGGATTACATCCAGGGATTTTTCAGAGGTCTGCCCCAGCCCCTGCCGGAGCCCCTGCTGCAGAAGGAGGTAACCAGCCTCCCCCTAACCTCACCAGCAACCGTCGCTTACAGCAGACACAGGCTCAAGTGGATGAGGTGGTGGACATTATGCGTGTGAACGTGGACAAGGTTCTGGAGAGGGACCAGAAGCTGTCAGAACTGGATGATCGGGCTGATGCCCTGCAGGCTGGAGCCTCACAGTTCGAGACCAGTGCCGCCAAGCTCAAGAATAAATACTGGTGGAAGAACGCCAAGATGATGATTATCCTGGGGGTGATATGTGTGATTGTCCTCATCATAATCATTG

Function

symbol description
vamp2 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Located in cleavage furrow and vesicle. Is expressed in blastomere; head; nervous system; and pancreatic system. Orthologous to human VAMP2 (vesicle associated membrane protein 2).

GO: NA

KEGG:

id description
K13504 VAMP2; vesicle-associated membrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_10160458_10161768.mRNA False 2424 mRNA 0.39 4 10160458 10163762

Neighbor

gene id symbol gene type direction distance location
CI01000304_10137324_10147067 PER1A coding downstream 10927 10137040 ~ 10149531 (-)
CI01000304_10123588_10128249 PCOLCE, PCOLCEA coding downstream 32209 10123407 ~ 10128249 (-)
CI01000304_10119297_10119833 NA coding downstream 40625 10118890 ~ 10119833 (-)
CI01000304_09955649_09957311 NA coding downstream 201151 9955554 ~ 9959307 (-)
CI01000304_09949821_09951564 NA coding downstream 207201 9949165 ~ 9953257 (-)
CI01000304_10167646_10169639 NA coding upstream 2425 10166187 ~ 10169639 (-)
CI01000304_10187728_10188909 NA coding upstream 23509 10187271 ~ 10188909 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK coding upstream 27636 10190574 ~ 10192357 (-)
CI01000304_10209150_10210418 NA coding upstream 44873 10208635 ~ 10210891 (-)
CI01000304_10220812_10226103 NA coding upstream 55827 10219589 ~ 10226103 (-)
G424496 NA non-coding downstream 97 10159648 ~ 10160361 (-)
G424474 NA non-coding downstream 70231 10082398 ~ 10090227 (-)
G424482 NA non-coding downstream 97706 10062265 ~ 10062752 (-)
G424448 NA non-coding downstream 124390 10033594 ~ 10036068 (-)
G424418 NA non-coding downstream 182972 9977259 ~ 9977486 (-)
G424504 NA non-coding upstream 9837 10173599 ~ 10174147 (-)
G424535 NA non-coding upstream 88459 10252221 ~ 10252462 (-)
G424797 NA non-coding upstream 98309 10262071 ~ 10262340 (-)
G424823 NA non-coding upstream 108161 10271923 ~ 10272411 (-)
G424829 NA non-coding upstream 153540 10317302 ~ 10317531 (-)
CI01000304_09737662_09738777 NA other downstream 420987 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 591424 9566730 ~ 9575706 (-)
G423386 NA other downstream 1295162 8862223 ~ 8865296 (-)
G422810 NA other downstream 2507755 7630159 ~ 7652703 (-)
G422378 NA other downstream 3377412 6744679 ~ 6783046 (-)
G424808 NA other upstream 280593 10444355 ~ 10542665 (-)
CI01000304_11338304_11348212 ILK other upstream 1183258 11338019 ~ 11348212 (-)
G425580 NA other upstream 1704915 11868677 ~ 11872906 (-)
G426106 NA other upstream 2172939 12336701 ~ 12340228 (-)
G424239 NA non-coding downstream 312919 9840107 ~ 9840527 (-)

Expression


Co-expression Network