CI01000304_10167646_10169639


Basic Information

Item Value
gene id CI01000304_10167646_10169639
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10166187 ~ 10169639 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_10167646_10169639.mRNA
AGACCAAAGATGAGACAGAAGCATCTAATCCATCCGTCAGCATTGACTCTGAACAGGCCCATGATTTTCTGGCACATGCACGTCCGAGAAGAACTGCTGACCCCAACTGGCATCGCAAAAATCCAGACTTTCAGTCCTACTATCGCTACTACAGCAGTATTGGGCACACTGAAGGGCTCTATGAGATAGACAGACTTCGAATGCTTTACCAGCAGATGCGACATCTGGAGCTCACTTATGGCCCCGATGCATCCAAATACCAGAATACCCTCGGTCTTCAACTTAAGTCGACGCCTCCACCCACAACCCAGCCTCCACCTCCTACCTTACCACCTGTCTCCAAGATGGATGTCATGTACCTGTGTAATTCAAAAGACCCCCAGTGCAATCCACATATTGTGTACCTGCCTGCCGGTGGGGTACCTGTTCTTTGCGATCCACGTTATCACCCAAACTGTAAACTCAGTCCTGTCCAGGAGTCCCCCTCTCCACCTGTAACTGCTTCAGAACCAGTGACGTCTGCCCCTCCTCCCCCACAAAAATCCACTCCACCACCACCTCCTCCTCCAATGATTATCAAAGGAATAGAGTATGACTGTGATCCCTACTGGGACCCTGACTGCCTCATCGACAGTCCTCCCAGGCCAGTAAAGATGATCAAACCACAACCAGTGCTCCCAGCTGAGAAGTTAAAAAAGGAAACAGGGAACAAAGTAATCCTAAATGCTCCAGTTCCGACCTATGACCCATATGACTTCAATCAAGATCTATTTGATCCATTCCGCCATGCAGCTCCAGCCCCTTGATTTTCAATTTCAGTCTAAAAAATATGCATTTAATAATTTACCCTTACATTCATGTTTTTTTTAATCAAGAGATGTATAATTTGTAACATATAGTAAACCATGGCCTTGTTTATAATATGTGGCTAATGTTAGATTTAAATTCTTTAAATAATAAAAAAAATGAATAAAAGATTTGGACACAGTTATTACATGCTCACGTCTTTTATTAACAAAAAAAAAACTATTTTGTTTATTTAATTAATTTTATTATTTATACGTTTTGTCTATGCTTCATATGTAGGGCTATTTAAGCCCAAAATATAGTATATGGGCACACTGACACCATCAGGTCATGGAGAGGAAACGCTTATAGAAAAACAAATTCTTTCGTATTTCAAAACACATTAGTCATTCGTGAAATTATCACAGGGAACAGGGAATATAAATATTCTATCCATTTGTAAACCATTTTCAGGACGGTCGTATACGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTTAGGCTCCAGTCTCTCTGGAGGCGTGGGTTCGAATCCCACCGCTGCCAAATATGTTTTAAAAGTTTAGGAAGCTATTCTAACGCTTTTAACATTACGCATGTTGAAGAGCGCAGACCTTCAACTGTGGTATGTCTTTGTCACCGTTTCTTTACATATATCTTCAGACATTTTTAAGAGGCCATCTTTTCACAAAATCCAAACGTTTCTTATGTTCTTAACAAACGCTTTTAATGTATTTTTTCTAGTTTCTTATTGAGCAAACTTATACAAGAAACATATACAAATTATACACGTTTTACGAAATTCAAAAGGCACCGCTGGGATTCGAACCCAGGATCTCCTGTTTACTAGACAGGCGCTTTAACCAACTAAGCCACGGCGCCTGCGAGCGCTTCCGTAAAAGGTGATGATCGTATTTGGGTTGTATTTTTGTATTTGGGTTGTATCAATGACAAAAGCAGCTAGATTACCAGATGAGCATGACCATTTTCTGTGTAGAGCAAAGGGGATTTTCAACAATCCTTTCATAATATTAGGACAAACCTAGCTGGAAAACATTGTCACCTATTGCATTTTCCGGTTAGCTGATAATGTTTACATGTAGCACGACAACTTCCTGAAAATAATTCGACGAGGATGGGATTCGAACCCACGCGTGCAGAGCACAATGGATTAGCAGTCCATCGCCTTAACCACTCGGCCACCTCGTCTCCACGCCTGCGCAACTTAAATCATGCGTAGTTAAACAACTGTTCAAAATTACAGTAAACACTAGACCGCTTACTTAAAACTTAAACTGTTCAAACATTATAATTACTCTTAAACAACGTTCTACAATAATTGTATTATAAATATTTACAACAGCAACAAATATAGTTTCATAACATCCCACACACTTTTTTCATCTATAAAGAATATCAACATCATCTGTTTTTCAAACCACACTTAAAAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_10167646_10169639.mRNA True 2265 mRNA 0.40 3 10166187 10169639

Neighbor

gene id symbol gene type direction distance location
CI01000304_10160458_10161768 VAMP2 coding downstream 2425 10160458 ~ 10163762 (-)
CI01000304_10137324_10147067 PER1A coding downstream 16656 10137040 ~ 10149531 (-)
CI01000304_10123588_10128249 PCOLCE, PCOLCEA coding downstream 37938 10123407 ~ 10128249 (-)
CI01000304_10119297_10119833 NA coding downstream 46354 10118890 ~ 10119833 (-)
CI01000304_09955649_09957311 NA coding downstream 206880 9955554 ~ 9959307 (-)
CI01000304_10187728_10188909 NA coding upstream 17632 10187271 ~ 10188909 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK coding upstream 21759 10190574 ~ 10192357 (-)
CI01000304_10209150_10210418 NA coding upstream 38996 10208635 ~ 10210891 (-)
CI01000304_10220812_10226103 NA coding upstream 49950 10219589 ~ 10226103 (-)
CI01000304_10284509_10291314 NLE1, NLE1.S coding upstream 114870 10284509 ~ 10291314 (-)
G424496 NA non-coding downstream 5826 10159648 ~ 10160361 (-)
G424474 NA non-coding downstream 75960 10082398 ~ 10090227 (-)
G424482 NA non-coding downstream 103435 10062265 ~ 10062752 (-)
G424448 NA non-coding downstream 130119 10033594 ~ 10036068 (-)
G424418 NA non-coding downstream 188701 9977259 ~ 9977486 (-)
G424504 NA non-coding upstream 3960 10173599 ~ 10174147 (-)
G424535 NA non-coding upstream 82582 10252221 ~ 10252462 (-)
G424797 NA non-coding upstream 92432 10262071 ~ 10262340 (-)
G424823 NA non-coding upstream 102284 10271923 ~ 10272411 (-)
G424829 NA non-coding upstream 147663 10317302 ~ 10317531 (-)
CI01000304_09737662_09738777 NA other downstream 426716 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 597153 9566730 ~ 9575706 (-)
G423386 NA other downstream 1300891 8862223 ~ 8865296 (-)
G422810 NA other downstream 2513484 7630159 ~ 7652703 (-)
G424808 NA other upstream 274716 10444355 ~ 10542665 (-)
CI01000304_11338304_11348212 ILK other upstream 1177381 11338019 ~ 11348212 (-)
G425580 NA other upstream 1699038 11868677 ~ 11872906 (-)
G426106 NA other upstream 2167062 12336701 ~ 12340228 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002755 and3 coding NC_007121.7 CM002894.2 22848556 ~ 22854758 (-)
rainbow trout (Oncorhynchus mykiss) G2177471 NA non-coding NC_048593.1 CM023247.2 34546072 ~ 34546586 (+)
striped catfish (Pangasianodon hypophthalmus) trnas-gcu_22 NA non-coding NC_047613.1 CM018559.1 14401394 ~ 14401475 (+)
striped catfish (Pangasianodon hypophthalmus) trnas-gcu_6 NA coding NC_047611.1 CM018557.1 1097798 ~ 1097879 (-)
bowfin (Amia calva) AMCG00020677 NA coding CM030127.1 CM030127.1 29059415 ~ 29071096 (-)
mexican tetra (Astyanax mexicanus) trnas-gcu_6 NA misc NC_035917.1 CM008320.1 14091509 ~ 14091590 (-)
mexican tetra (Astyanax mexicanus) trnas-gcu_22 NA coding NW_019172828.1 APWO02000046.1 2285079 ~ 2285159 (-)