CI01000304_10191594_10192287 (RNASEKB, RNASEK)


Basic Information

Item Value
gene id CI01000304_10191594_10192287
gene name RNASEKB, RNASEK
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10190574 ~ 10192357 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_10191594_10192287.mRNA
ACCTATATGTCCTAATTTTAAATATTCATAACAAACCTTGTTATTAATTATTCACTCTTGTTTTCAGTCAATGTTGGGAATCTTCTTCAGTGCAAAATCTGCTGTGCTGATCGAAGATGTTCCCTTTACTGAGGAAGACATCCGTGATGACAAGAATCCACCACAGACAATTTACGGACTCTACAACCAAGTTGGGATCAACTGCTTCATTGCTGCTGCCATCTACGTAGGTGTTGGCGCAGTGTCTCTGTGTCAAGTTCGCCTTAACAAGCGCCAGGAGTACATGGTCACATAAACCCAGACCATTTCCAAATTCAACTCCAATTATTCCTAATTATTTATTTTTTAAAAGACTTCTCAACAATCTAGAAGAAGATTTTGCTTTGTTATATTGTCTGAAATTGATATATTTGCCAGTTAATCTTTGGCTCAAAATTTAAATACTAGATATATAATGTTATGAAGAAAAAGTGTCCAAAACATACAATAAA

Function

symbol description
rnasekb Predicted to enable endoribonuclease activity. Predicted to act upstream of or within nucleic acid phosphodiester bond hydrolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNASEK (ribonuclease K).
rnasek Enables endoribonuclease activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K19770 RNASEK; ribonuclease kappa

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_10191594_10192287.mRNA False 491 mRNA 0.35 2 10191398 10192357

Neighbor

gene id symbol gene type direction distance location
CI01000304_10187728_10188909 NA coding downstream 2489 10187271 ~ 10188909 (-)
CI01000304_10167646_10169639 NA coding downstream 21759 10166187 ~ 10169639 (-)
CI01000304_10160458_10161768 VAMP2 coding downstream 27636 10160458 ~ 10163762 (-)
CI01000304_10137324_10147067 PER1A coding downstream 41867 10137040 ~ 10149531 (-)
CI01000304_10123588_10128249 PCOLCE, PCOLCEA coding downstream 63149 10123407 ~ 10128249 (-)
CI01000304_10209150_10210418 NA coding upstream 16278 10208635 ~ 10210891 (-)
CI01000304_10220812_10226103 NA coding upstream 27232 10219589 ~ 10226103 (-)
CI01000304_10284509_10291314 NLE1, NLE1.S coding upstream 92152 10284509 ~ 10291314 (-)
CI01000304_10350748_10388571 CADM2A coding upstream 157512 10349869 ~ 10388602 (-)
CI01000304_10812673_10812980 NA coding upstream 620176 10812533 ~ 10815238 (-)
G424504 NA non-coding downstream 17251 10173599 ~ 10174147 (-)
G424496 NA non-coding downstream 31037 10159648 ~ 10160361 (-)
G424474 NA non-coding downstream 101171 10082398 ~ 10090227 (-)
G424482 NA non-coding downstream 128646 10062265 ~ 10062752 (-)
G424448 NA non-coding downstream 155330 10033594 ~ 10036068 (-)
G424535 NA non-coding upstream 59864 10252221 ~ 10252462 (-)
G424797 NA non-coding upstream 69714 10262071 ~ 10262340 (-)
G424823 NA non-coding upstream 79566 10271923 ~ 10272411 (-)
G424829 NA non-coding upstream 124945 10317302 ~ 10317531 (-)
G424830 NA non-coding upstream 125254 10317611 ~ 10318093 (-)
CI01000304_09737662_09738777 NA other downstream 451927 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 622364 9566730 ~ 9575706 (-)
G423386 NA other downstream 1326102 8862223 ~ 8865296 (-)
G422810 NA other downstream 2538695 7630159 ~ 7652703 (-)
G424808 NA other upstream 251998 10444355 ~ 10542665 (-)
CI01000304_11338304_11348212 ILK other upstream 1154663 11338019 ~ 11348212 (-)
G425580 NA other upstream 1676320 11868677 ~ 11872906 (-)
G426106 NA other upstream 2144344 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 2366497 12558854 ~ 12560135 (-)

Expression


Co-expression Network