CI01000304_11323923_11325889


Basic Information

Item Value
gene id CI01000304_11323923_11325889
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11322230 ~ 11325905 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_11323923_11325889.mRNA
GTATAAAAATAAATAAAACAGCACCATCTACTCAGCACTGCCAAATCTCATTAATGGAAAACGATGAAGCGATCTGGTGAGAAAAAGGATCTACAAAACACAAGAGTTGTCTTTAATTCTTTAATTCAGTTTTTATTTCTTTTAAAGCTGTTATGTAACAATTTATGTTGTACAACTCCATTTCCAGAAAAGTTGGAACTGGGTGTTACGATATCAGATTTTTCACACCGCGGTTATCGTGGCCAAAAGAATTTATCACAGATGTCCCATTGTCGCTCACCCTATATTCACACTGCCTTTTCTATTATACACTGATGCTTCTCATGACTGTGTAGGTTCAGTGCTTGCGCAGATGCAGGATGGGAAGGAACGCGTAATTGTGTATGCCAGTCACACTCTGACACCTTCCGAAAAGAAATGGTCCACCTATGACCGCAAGCTGTGGGCTGTGGTGTGGTCTGTCCGACATTTCAGACATTTCTTGTCAGGGGCCCCATTCAAAATTATTACCGACCACAAACCTCAAAAAGGCCTCAGTTGATAATGATCCGACTGGTAGAAGAGCACGTTGGATACTTGAAATGGATGTGTATGACTTTACCATTCTTCACAGAGAAGGAAAGCAGCATAGTAATGCTGATTCCTTGTCGCGGCACCCTAGCTTACCTGTGACAGAAACAAAAGCAGTGCAGTGTGTAATTTCCAGCCATACTACTGCTGAAAAAGTCTCCTCTCCTGTTGAAGCGCCAAATGTTTGTGGAGTACTTCCTGACACAAGTCCGACACTGTCAGTTGATTTGGCTGAATTACAAGTTCATCAAAAGGCTGACTTTTGTCTTAGTACTGTCATGAGCTGGAAAGAGAATGGTAATCAAAGACCACCATTAGGCAGACTGAAACGTTCCCCAGCCACACTTAGGAAACTCTGGCATGAATTCCCCAAATTATCAGTCCAAGAGGGTATATTGTGTCGCAGAGTAAAGTCATCTCTTCATAGCCCTCCTGTTTACCAGATAGTCTTGCCTGAAGTATTCATTCTAACCGCTCTTAAGTGTATTCATGGGGAGAAGTTTAGTGGTCATTTGAGTGCTGAGCGTACTTTGTTGAGAGCCAGGAAAATATGCTATTGGCCTTACATGTCCTGTGATATCCAGAAATTCTGTGCTGAATGTGTATCCTGTCAGTCATGTGCTTCTACCGCTCCTCATGAACGGGCCCCATTACAGTCCATTAATGCAGACAGACCATTTCAAAGAATTGCTGCTGACATCACTGAGCTACCTGTTACTTCACTTGGGAATAGGTATATTTTAGTTGTAATGGACTATTTTACTCGTTTTGTCAATCTGTACCCCCTGAAAGATCAGCGTGTGACAACTGTAGCACAGTGCATTTTTGAGGATTACATTAAGCAGCACGGGGTCCCTGAGGTAGTCCATACGGACCAAGGTAGACAGTTTGAATCAGATTTGATTAAACATCTGTGCAGTCAACTTGGCATTGAGAAAACCCGTACCTCACCCTACCATGCCCAGTGTGATGGTATGGTCGAAAGACTGAATCGAACATTGAAGGACCAACTCGCCAAGTACATTTGTGAAAGTGGGGGTGAATGGGATAAATATCTGCCTCAAGTGGAACTGACCTATAATTCCAGTGTTCATTCCAGCACTGGGTTCTCTCCTTTCTTTCTTGCACATGGCAGAGAACCACGACTGCCTGCCGATATCCTTTTGAACTGTAGTCCGGCTATCACTTCCTGTACACCAGGCACCCCTGCAGACTATGCTCGTGATGTGATGCTCGTTTATCATATGCTTTCAAGGATGCTGCTGTGCGGTCCAATGCAGCTAAACTTAATCAGAAACGGCACTCAAAAGCAGAATAAACTGGCTCCTAAATGGAAAGGGCCATACAAAAATCTGAGGAGAATGGACAAGGATGACACCCATGGTGTAACTTACGAGATTACGGACCCGAGACATCCACAGTCCAGAAGGTGGATGGTTCATCACAATCGCCTAAAGCCTTACAAGGGTTCTTTTTGGAAATTACCTGCCATTGCCTCTCCAGTATCTGTGCCTCCTGTTGTGAATAGTGCTGAGGCCCCTCACTCAGTTCCCCTCACTGCATTGTCTGGAGCTTTGCCTTTCCGACCCCCTACACCACCTTATGTGCCTAACCAACCTGCAAAGCAGATTGCTTGCGGGGCAAGAACTGACTGTTCAGCTCAAACTCTTTCTTTGTCTGGGCCAGAATCTGTGCCACAGCCTAATGTTTCCCCTACAGACTCTCATTGGGCAACAATATTCATTTTTCTGTCCAACTAACTTACATAACCAGACA

Function

NR:

description
LReO_3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_11323923_11325889.mRNA False 2346 mRNA 0.44 2 11323495 11325905

Neighbor

gene id symbol gene type direction distance location
CI01000304_11318496_11322260 NA coding upstream 1006 11318436 ~ 11322489 (+)
CI01000304_11308263_11317998 TPTE2, TPTE coding upstream 5432 11307048 ~ 11318063 (+)
CI01000304_11301321_11304134 THSD1 coding upstream 19063 11300878 ~ 11304432 (+)
CI01000304_11288992_11297645 VPS36 coding upstream 25346 11288992 ~ 11298149 (+)
CI01000304_11264394_11268134 SLC46A3 coding upstream 55361 11264394 ~ 11268134 (+)
CI01000304_11449463_11453214 NA coding downstream 123061 11448966 ~ 11453315 (+)
CI01000304_11570457_11574856 CHORDC1 coding downstream 244552 11570457 ~ 11575290 (+)
CI01000304_11582257_11610398 GRM5, GRM5A coding downstream 255903 11581808 ~ 11610611 (+)
CI01000304_11613446_11620345 RAB38 coding downstream 287541 11613446 ~ 11620563 (+)
CI01000304_11676155_11681977 MAP3K7CL coding downstream 350250 11676155 ~ 11683131 (+)
G425044 NA non-coding upstream 42288 11280963 ~ 11281207 (+)
G425081 NA non-coding upstream 42628 11280527 ~ 11280867 (+)
G425048 NA non-coding upstream 114470 11192185 ~ 11209025 (+)
G425073 NA non-coding upstream 185787 11137389 ~ 11137708 (+)
G425027 NA non-coding upstream 201321 11116120 ~ 11122174 (+)
G425030 NA non-coding downstream 3763 11329668 ~ 11338444 (+)
G425036 NA non-coding downstream 21374 11347279 ~ 11355129 (+)
G425049 NA non-coding downstream 22148 11348053 ~ 11350064 (+)
G425273 NA non-coding downstream 106875 11432780 ~ 11433041 (+)
G425277 NA non-coding downstream 109765 11435670 ~ 11446373 (+)
CI01000304_10555326_10571933 NA other upstream 767791 10555216 ~ 10572164 (+)
G424251 NA other upstream 1130600 10188822 ~ 10189404 (+)
G424246 NA other upstream 1196173 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 1757922 9561005 ~ 9565778 (+)
G423614 NA other upstream 2374073 8949036 ~ 8949422 (+)
G425718 NA other downstream 1102800 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 2230546 13578049 ~ 13595097 (+)
G426312 NA other downstream 3004143 14330048 ~ 14330886 (+)
G426828 NA other downstream 3622985 14948890 ~ 14950592 (+)
G427860 NA other downstream 4559549 15885454 ~ 15889591 (+)

Expression


Co-expression Network