CI01000304_12111812_12118998


Basic Information

Item Value
gene id CI01000304_12111812_12118998
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12111519 ~ 12120243 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12111812_12118998.mRNA
TGTTGCTTTTCTCGTGGTTTTTCCTGTAATCGGTGATGTTTTACTGACTTTTAATTATTCACTTGTTTGGGAGTTACACATTCCAGAGTTTTATAATTGTCAGTGTATTTTCACCATAATTTTGGACAATTTCGGAGTTAACTATTTTGTCTAAAACTGCAGAACTCGAATAATGTAGTGATCTCTATCACAGTATTTGTATCCTCGGGCTTTTTTTTTTTTTTTTTTTGTAAACATACTTGTTGAATTGCTGTAGACTAAGTTAAATAAGTCAAATCTTGTTTTGCTAGTGTAATTTTACGAAAAATAATGCTTTTATTAAAAATGTATATATTATGTATATAAATTAAATTAATATTTATATAAAAATTATATTAATATTTTCTAGGTAAATTATCATAATAACCCAGTGTGTAGGCTATATACAATGATAGTCGCGTCCAAAGCATTAAGTTACTTTAAATGTTGGAATTTCCTCTTACACCTGAAAAATAGATTAAGCAGCCAATAGAGTTCAAAAGTAGAGACCAAAGTATGTGTCATATGCAAAGTTCTTTATGCCTGATAATGTTAATCAAATGGTTTATTTAACTGCCTATTGAAGTTCATGGGCAAATTGGTCTTGTAAAGTATTATCTGACTTTGTGGTTTGCTCACACGGCTTTTTCAAATAAGCAACTTGCTCTTCCAGTCTAAGTGTTATCATTGGAAATTCATATGTTTGCTGTTTTTAATTATGGACATTTGGTTGCATCCACCGTATCCAACAAACAGGCTGAACAGTCCACCATCTGGTCCTAAATTGTGGCTTTACTTATGTTATTGATGGTAGTAATCTTGGATCGCTAAAGTTATTTTTCAGAAGTGAATTTCATTTCAAGCAAGAACATTAAATTAAATTAAATGTTCTTGCTTCTCTAGGAATTCTGGACCAGTTTTTGCCTCTCATTGTTATGTATTTTTATAATTTTTTTTTTTTTTTTTTTTTTTAATATATACATTTCTATCAGATCCCTTCAGCCAGTGAACTGGATTTGAGACGATTGGATGTCCACTTCGTGTCCTCCAATGGATGGAGCTCCAGTTGTAACCACGGCACCTCTACCTCCTGTTTCCTCCAGGTGCTTTCAAAATGAGACCTCACCCTTCAGACGTACCGCCCAGCCCCCTCCCCTGGGCCCTCCACCTCCTCCTCCCCCTCCGCCACCTCCACTACCACCCCCACCGCCTCCACCTCCTTCACCTATGGGGGACCCCTTCACCCGGACTGTCCAACGGCGCTCAAAAATGCGCAACTTCAACTGGGACGCCATCCCCAGGCATAGCGTTTTGGGCAAGCGCAACGTGTGGACAGCCCAACGCAACCTTGAGAACTTTGAACTGGACACTAAGCGCATGGAGGAGCTTTTCAGCCACAACGAGCACCAGGGTTTAGTCCGTAAGGGTGGGACGGTCAGAAAAAGTGTGTGGGGCCTTTCGCAAATCACTACAGAAGCAGAGAATGTATCAATTCTCAACTCTAAGAAAAGTATGAATATTGGTATTTTGCTAAAACGGTTTAAAAGGACACCGAAGGACATTGTAGAGGCTGTCAGGCACGGGAACCTCTGCTTTGCTTCCGGGAAACTGAAGGAACTCAACAAGCTGTTGCCCGATGACATGGAGACAAAGAAGCTGATGTCATTCAATGGAGATTTATCTCAGCTAAATGATCCTGACCGTTTCATGGTGATGCTGGTTCAAGTGCCTGGGTATAAAGTGAGATTAAAGAGCCTGCTCCTCAGAGAAGAGTTTTTTCCCTTTATAGAGGAGATCAAGCACTCCATTGCTGTCATGACAACTGCTGCTAATGAATTGCTGGCATGTGATGACCTACATTCAATCATCAGACTGGTGCTGAAGGCTGGTAACTACATGAATGCAGGTGGCTATGCAGGTAGTGCCATTGGCTTCAGGATGACATCATTGCTCAAACTAGTGGACACCAAAGCAAATAAACCTGGCATGAACCTTATGCACTATGTATCCATGTTGGCAGACATTCGGCTTGCAGACGTGGAGGCCTCTCTTCAGGAACTGGACACCATCAGTGCCTCAGTGGCAGAGTACTTCTGTGAAGACCCAGCCTCATTTAAACTAGAGGAGTGTTGCTCTATCTTTCATTCCTTCTGTGAGAGGTTTGAGAGAGCTACACAGGAAAACCGTGAGCGAGAAGTGGCTGAGACTCGCAAGCGACAGCAGAGAGAAAGAGAAAAGCTGACCAGAACGGCTAAGCGCCGATCCACCGGCACATGCTCCAATCGGGATGCGAGTGATGAAGCCACCGCTCTAGAATCTGTCCTGACCAGTTTCCTTAGCCAGCGTCCTTCTCGCAGGAGGCCCGTTGGGGACAGATCTGTCACAGACAGCCCCATCAAAAACATCTGCCCTCAGGTTGAGGAGCCTGAGGGCGGAGGGCATCTGGACAGCCCTGCGGAAACCAAAGAGGAGAAAATTGAGATCTCAAGGGTGCAAGAACCAGAGGACATCTGCCAGAAGGAGGAGGCTTCACTCTGCGGTGTTAATGATGTTCAGCGAGCACGTGCCACATCCAAAAGAGGACAGTGCATTGATGATGGACTGATTCCTGAATGCAATGACCATAAAAAAGGTGGGTGTAGCAACACCTCTACCAAACAAGAGTTTGTGGTGACTGAAGGTGAAGGGGTGGATAAAGGAGAAGTGGAGGAGACTGGAGACATGGATAAAGGAGAAAGAGAGGAGAACAATGAGAATACAGAGGAGGCAGACAAAATGCCCGAGCTCTCCGGCAAAATCTTCCGCTTTCAGGATTGCGGCGGCCTGAATGGAACCATTACACCAGATCGTTCCCGAGGCCACGTCATGTGCACCTCTACTCCTCGACAGAGGAACATAAAAGAGGTGGATCTGGCCTTGCAGAATGGAATGGGAGGTCTAGGCTCACCGTGGACCATCCTCAGCCCTCGTATCTCTCCCAGTAACACTCCCCACCGCAGACACTCCTTCTCCTTCTCCAGGGTGGATATCCTTGATGATGGGGTATGGGCGTTGCCTGACACACCTGTGCGCGACAAGCCCTCTTTCTCTCATAAATCGGGTGTGGGGACTTCATCCTCATTACCAGACTGTCCTTCAAAGCAAACTCCAGCACACGGGATGCCTATAAGGTCTGCATCACTTACTGATGAAAAAGAGCAAGCATCTAACTTCAAACTGGGACAGATCTTTCATAGACGCAATGGACAGGAGCTTCCTCCAGATAAAAGACCCGAAAGCTCAGGACTTGTGTCTTTCTTTCGACGCTTTGGGGAAAGAAACAGGGCAGGAACTGTTGGTTAAGAAGACATGGCATGTCTTACAGAGTTTTATATTTTTAAGGATTTTACGCTGCCATGAAGGATTTGATGAATGTAGACAATTGGGGACTTGTCTTACAATGTTCTTAATGTCTTTTGTGTTCTTATGCAAAACTACCTGATGACGCGTGCTGATGTCTTGATATTTTATTAGTTTTTAGCATTATTTCTAACAAGTTGATTTTATTGATTCACAACACTGAATTTCAGGGACTGAAATGCATTTTATTTTTGTTCTTTGTCTTTTTAAAGTTTGTCTTATTTTTATGTAATAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12111812_12118998.mRNA True 3653 mRNA 0.43 9 12111519 12120243

Neighbor

gene id symbol gene type direction distance location
CI01000304_12076818_12085420 TRIM3B, TRIM3A coding downstream 26099 12076555 ~ 12085420 (-)
CI01000304_11924813_11936040 TRPC4B, TRPC4, TRPC4A coding downstream 175161 11924384 ~ 11936358 (-)
CI01000304_11897314_11913788 POSTN, POSTNA coding downstream 197680 11896479 ~ 11913839 (-)
CI01000304_11850324_11861609 SCAF4, SCAF4A coding downstream 249910 11849777 ~ 11861609 (-)
CI01000304_11845828_11848857 SOD1 coding downstream 262356 11845614 ~ 11849163 (-)
CI01000304_12123700_12132292 ARFIP2B, ARFIP2 coding upstream 3166 12123409 ~ 12132506 (-)
CI01000304_12166589_12192298 NA coding upstream 45747 12165990 ~ 12192298 (-)
CI01000304_12249076_12249428 NA coding upstream 128323 12248566 ~ 12249722 (-)
CI01000304_12254455_12256896 DCHS1 coding upstream 133869 12254112 ~ 12258111 (-)
CI01000304_12305300_12310341 SLC46A3 coding upstream 183377 12303620 ~ 12310341 (-)
G426065 NA non-coding downstream 6854 12104444 ~ 12104665 (-)
G426025 NA non-coding downstream 43119 12068028 ~ 12068400 (-)
G426061 NA non-coding downstream 46482 12064379 ~ 12065037 (-)
G426052 NA non-coding downstream 66958 12043458 ~ 12044561 (-)
G425993 NA non-coding downstream 125824 11985328 ~ 11985695 (-)
G426071 NA non-coding upstream 24812 12145055 ~ 12145359 (-)
G426092 NA non-coding upstream 151545 12271788 ~ 12271991 (-)
G426103 NA non-coding upstream 176313 12296556 ~ 12296831 (-)
G426016 NA non-coding upstream 193384 12313627 ~ 12316312 (-)
G426110 NA non-coding upstream 242475 12362718 ~ 12363607 (-)
G425580 NA other downstream 238613 11868677 ~ 11872906 (-)
CI01000304_11338304_11348212 ILK other downstream 754373 11338019 ~ 11348212 (-)
G424808 NA other downstream 1568854 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 1918624 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 1947189 10160458 ~ 10163762 (-)
G426106 NA other upstream 216458 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 438611 12558854 ~ 12560135 (-)
G426147 NA other upstream 575755 12719497 ~ 12805926 (-)
G427057 NA other upstream 1387398 13507641 ~ 13507922 (-)
G427154 NA other upstream 1811548 13931791 ~ 13950548 (-)

Expression


Co-expression Network