CI01000304_12394477_12400175 (TMTOPS3B)


Basic Information

Item Value
gene id CI01000304_12394477_12400175
gene name TMTOPS3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12393500 ~ 12400315 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12394477_12400175.mRNA
CTATAAAACCACATATCCCAATGACTAGACTAGACTACATTCTCATATGTCAGTCCTTATTAATAGTTCCCTTTTTAGACAGATATCAAAAGACCCTTGACCTATATAGGTATAGGTCATGCATAGGGGTATTGTGGCAAGCCATTTTTTACCTTTATTCCTTTAAACTAACTAGTATATTTTTATATTAGTATTTACTTTTAAAATGATTTTATAAATTGCAGTAGTATAGTGTCTTTTTCAGTTTCACTAAATAAAACTAAATATTCCAAAAGATACTATCTTACAAGTATCTGTTCAAACTTAACTAGCGGCCTACATAGGCTATTAATTGAACTACCTACTACAGGTATTTATGACACTAATACCTATCCCATTTGTTACTAGTAACATTTCTTATCTCACTAATTACACTTGCTTTTTTACTTGTTAGATGTAATGATAGAATAGCTACCTATAGTTCAACTTGCACATCTTACTACACTGTAAAAAAAAAACTGTTAAAATAGGGCACGATGTACTGCATAAATATTCTGTATAAATATTCTTATAATAGTGTTTTAGGGTTGACGGACATTTCCATAAAATTACGGGATAATGTAGGCTACTAGCAGAAAATTTATGTTTTTATTTTTTATAGTGTAGAATTTAAAAGTGAAATTCAACAATAAAAGGCCTGGTCACTACTGGATTTCTTACTAATAATTAAAAAAATACACTATTGACAAAAATATTTATTCGTTTTAAGGACTAAATGGCTTGCCATACTATGAGGATAAACGTGCTTGAGTGGCGTTTATGTTGATAGAGCTGATTACGGGTAGGTCGCGTTCTGCTGAGGAGGGGGCCACTAGTGGGGGCATAATGAATGGGATCTGTGGGTCTACATGGTATTTAAACAGCCTGAGAGTGTAACTAACTTTCTCATTCTTAAGCTTCTCCATTCCAGTATACAGGTGTGCTCTTTTTAGTCTACTATGGTTACTGTCCGATACTGTAACGGCAGCCAGCTGGACACACTGACTCCAGATCAGCCCGGATTCAGCCGCACGGGATACACTGTAGTGGCAGTGTGTTTGGGAATTATCTTTCTTTTCGGTTTCCTAAATAACTTTCTTGTTCTTTTGGTCTTCGCCCGCTTTCATGTTCTGAGGACTCCGATCAATTTAATACTGCTCAACATCAGTGTGAGCGACATGCTTGTTTGTATCTTTGGTACACCTTTAAGTTTCGCCGCGTCTGTATACGGCCGGTGGCTGACGGGAGTTCACGGCTGCAGGTGGTATGGTTTTGCCAACGCACTGTTTGGTATTGTTTCACTGGTATCTCTTGCTGTACTGTCATACGAGCGTTACAGCACCATCCTCTGCTGCTCAAAAGCGGATGTTTCTGACTATAGGAAGGCCTGGCTTTTCATCACAGGCTGCTGGCTGTACTCTCTCGCGTGGACAGTGCCACCACTCTTTGGCTGGAGTAGCTATGGTCCTGAGGGTCCCGGCACCACCTGTTCAGTCCAGTGGAACCAACGCTCCCCGGAAACGAGTTCTTACGTCATCTGCCTCTTTGTCTTTTGCCTGCTGCTGCCTCTTCTTCTCATGGTCTTCTGCTACGGGAAGATTCTCATTGCCATTCATGGGGTTGCTAAGATCAATCAGACAGCTGCACAGAGGAGAGAGACGCACGTGCTGGTGATGGTGGTTTCCATGGTGTCCTGTTACCTGCTCTGTTGGATGCCATACGGGGTCATGGCATTGCTTGGCACATTCAGCGTAGGCATTGTCAGCCCCACAGCCAGTGTCGTGTCCTCCATACTAGCAAAGAGCAGCACTGTTTTGAATCCCATCATCTACATTCTGTTCAATAATCAGTTCTACAGGTGCTTTATAGCTTTAGTAAGATGCGGTCCAGAACCTCCAGCCCATCTCACCCTTCACACAGAAGAAGGTGGTGCTCAACAGGACTGCATCCCTATGGGGTCATATGGTGCTACTTCTCCACCCGACAGCCCAGATAAATTTGGGACCCCCACAATGACCCAAAGGGCTTCACTACAGAGAGAGATAGAGCTGCATATCACATTCTCTAATGAGCCAGCAAACCAGCCGATGAGAAAAGATCTTCAGCTCTGAGAATGGCAAGTTGATCTGAAAAACCCTTCTGAGTTGACAAGGTTTGGTATTCTACAGTTATGTTTAAGATCGATCAAAGATGTAATCAAATTAGTTACATGATATGCTGTGTAGTTTATCAAATTAATTGCAATTAATCA

Function

symbol description
tmtops3b Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gill; heart; and integument.

NR:

description
teleost multiple tissue opsin 1b

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12394477_12400175.mRNA True 2269 mRNA 0.41 5 12393500 12400315

Neighbor

gene id symbol gene type direction distance location
CI01000304_12385473_12389970 NA coding upstream 2973 12385473 ~ 12390527 (+)
CI01000304_12375591_12385064 HTATSF1 coding upstream 8380 12375591 ~ 12385120 (+)
CI01000304_12362738_12374610 NA coding upstream 18890 12362738 ~ 12374610 (+)
CI01000304_12353305_12359214 FHL1B coding upstream 33662 12353006 ~ 12359838 (+)
CI01000304_12340979_12347664 SLC9A6B coding upstream 45610 12339847 ~ 12347890 (+)
CI01000304_12424217_12429262 NA coding downstream 22891 12423206 ~ 12430351 (+)
CI01000304_12437868_12439019 NA coding downstream 37343 12434972 ~ 12439086 (+)
CI01000304_12468041_12473615 ARR3A coding downstream 67726 12468041 ~ 12473708 (+)
CI01000304_12478136_12484791 NA coding downstream 77821 12478136 ~ 12484978 (+)
CI01000304_12485748_12487703 SSSCA1 coding downstream 85433 12485748 ~ 12487763 (+)
G425764 NA non-coding upstream 90774 12302340 ~ 12302726 (+)
G425765 NA non-coding upstream 92878 12300413 ~ 12300622 (+)
G425666 NA non-coding upstream 136306 12255099 ~ 12257194 (+)
G425660 NA non-coding upstream 219441 12172882 ~ 12174059 (+)
G425635 NA non-coding upstream 277134 12111311 ~ 12116366 (+)
G425777 NA non-coding downstream 54866 12455181 ~ 12455395 (+)
G425778 NA non-coding downstream 55178 12455493 ~ 12455853 (+)
G425796 NA non-coding downstream 160759 12561074 ~ 12561425 (+)
CI01000304_12583384_12588591 WDR74 non-coding downstream 188606 12583384 ~ 12589788 (+)
G425812 NA non-coding downstream 190941 12591256 ~ 12593865 (+)
CI01000304_10555326_10571933 NA other upstream 1837796 10555216 ~ 10572164 (+)
G424251 NA other upstream 2200605 10188822 ~ 10189404 (+)
G424246 NA other upstream 2266178 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2827927 9561005 ~ 9565778 (+)
G423614 NA other upstream 3444078 8949036 ~ 8949422 (+)
G425718 NA other downstream 28390 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 1156136 13578049 ~ 13595097 (+)
G426312 NA other downstream 1929733 14330048 ~ 14330886 (+)
G426828 NA other downstream 2548575 14948890 ~ 14950592 (+)
G427860 NA other downstream 3485139 15885454 ~ 15889591 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location