CI01000304_12558231_12558565


Basic Information

Item Value
gene id CI01000304_12558231_12558565
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12558086 ~ 12558741 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12558231_12558565.mRNA
ACTGCTTTGACACTTTCACCTGAACATGTCAAATCCACCTCCACTACCGGAGAAGTCGAGTCCGGTCAGAAAACCGCTATTTGAGGACTGCTGGAGCTGCCGAATCCTCTCGGGCGGTGGGCTGCTGGCTTCAGGCGGATATGTGTTCATGCAAGCGCGTAAATTCATGCATTTAGGTGGACCCACATCTATGGGCACAGTGGCTCAGATCATATTTGCAGCAGGTTTGGCTTCTTGGGGCCTCGTGGTGATCGCTGATCCAGTGGGAAAGAATACAAGAAAAGAATAGCATTGCACTTGCTGCTCCTGTATTGATATGGACTTTTAGAATGAATTACCAAAGCCACATTGCATGATACTGCAAAGTTAAAATGATATTCAAATGTATATTCAAACTGTGCGAATGTAATGACATGTGAATCAATTTCATTAAA
>TU489318
GTCATCGTGACATACCCGATTTTTCTCACACTGCGTCCTATAAGTGACAGAGTTGGTGGAGTTCTCTGTATAAATATTAATAATGTTACCAAGTAATTTGGAAAGTAGATAGTGTCATTGTTTATAAACAGCAGAGACCAGTTACACAGGAACTGCTTTGACACTTTCACCTGAACATGTCAAATCCACCTCCACTACCGGAGAAGTCGAGTCCGGTCAGAAAACCGCTATTTGAGGACTGCTGGAGCTGCCGAATCCTCTCGGGCGGTGGGCTGCTGGCTTCAGGCGGATATGTGTTCATGCAAGCGCGTAAATTCATGCATTTAGGTGGACCCACATCTATGGGCACAGTGGCTCAGATCATATTTGCAGCAGGTTTGGCTTCTTGGGGCCTCGTGGTGATCGCTGATCCAGTGGGAAAGAATACAAGAAAAGAATAGCATTGCACTTGCTGCTCCTGTATTGATATGGACTTTTAGAATGAATTACCAAAGCCACATTGCATGATACTGCAAAGTTAAAATGATATTCAAATGTATATTCAAACTGTGCGAATGTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12558231_12558565.mRNA False 434 mRNA 0.45 2 12558086 12558590
TU489318 True 561 lncRNA 0.43 2 12558110 12558741

Neighbor

gene id symbol gene type direction distance location
CI01000304_12555015_12556002 MRPL49 coding downstream 2084 12554726 ~ 12556002 (-)
CI01000304_12552338_12553936 NA coding downstream 4150 12552280 ~ 12553936 (-)
CI01000304_12442703_12460793 NA coding downstream 96358 12442696 ~ 12461728 (-)
CI01000304_12409495_12416078 FGF13.L, FGF13A, FGF13B, FGF13 coding downstream 142008 12408897 ~ 12416078 (-)
CI01000304_12305300_12310341 SLC46A3 coding downstream 247745 12303620 ~ 12310341 (-)
CI01000304_12559311_12559998 NA coding upstream 642 12558854 ~ 12560135 (-)
CI01000304_12570121_12574061 CNIH2 coding upstream 11469 12570059 ~ 12574061 (-)
CI01000304_12687020_12696284 AUTS2, AUTS2A coding upstream 127867 12686457 ~ 12696284 (-)
CI01000304_12887576_12889393 NA coding upstream 328634 12887224 ~ 12889393 (-)
CI01000304_12953008_12953457 NA coding upstream 394114 12952704 ~ 12953480 (-)
G426142 NA non-coding downstream 22882 12534071 ~ 12535204 (-)
G426170 NA non-coding downstream 62251 12495626 ~ 12495835 (-)
G426127 NA non-coding downstream 84355 12468037 ~ 12473731 (-)
G426017 NA non-coding downstream 131879 12425853 ~ 12426207 (-)
G426044 NA non-coding downstream 183039 12374696 ~ 12375047 (-)
G426184 NA non-coding upstream 30333 12588923 ~ 12589220 (-)
G426188 NA non-coding upstream 31323 12589913 ~ 12590112 (-)
G426135 NA non-coding upstream 62877 12621467 ~ 12625378 (-)
G426147 NA non-coding upstream 137408 12719497 ~ 12805926 (-)
G427020 NA non-coding upstream 536833 13095423 ~ 13095773 (-)
G426106 NA other downstream 217858 12336701 ~ 12340228 (-)
G425580 NA other downstream 685180 11868677 ~ 11872906 (-)
CI01000304_11338304_11348212 ILK other downstream 1200940 11338019 ~ 11348212 (-)
G424808 NA other downstream 2015421 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 2365191 10190574 ~ 10192357 (-)
G427057 NA other upstream 949051 13507641 ~ 13507922 (-)
G427154 NA other upstream 1373201 13931791 ~ 13950548 (-)
G427309 NA other upstream 1630878 14181932 ~ 14237078 (-)

Expression


Co-expression Network