CI01000304_12583384_12588591 (WDR74)


Basic Information

Item Value
gene id CI01000304_12583384_12588591
gene name WDR74
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12583384 ~ 12589788 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12583384_12588591.mRNA
GGGTGAGTATCAGCAAAAAGCAGGCGTTTAACTTCTGTGAGATGAGCTGCTTGAGTCGGGATCAGGAGGTTTGTGTGATGGCATGGGGAGACCCTCACGAATCAGAGGTGTTAGTGGGCAGTGTGAACGGCACTGTGAAAACTTTCAGCACAGATAAGGGGATCTTCACGGCGACCAGAGAGTGTGGGGATCCTTCACAGGGCAGATTCACAGGACTTGCTGTCACTGACAGTTCTTTGATCACGTGTGTGGAGTCAGGACTGCTGAAGGTGTGGAAGGAAGGCAGTACAGACACAGTTGAGGTAAATGTTGGGAATGGAATTTGCAGAATGCGACAGAACCCGTCACAGCGCCATCGTGTGGCTACAGGGGGTAAAGAGAACCTGCTGAAAGTCTGGGATCTGGAGAGACCAGATAAGCCAATATTCACAGCCAAAAATGTAGCCCATGACTGGTTGGATATGCGAGTGCCCGTGTGGGTGAGAGACATCGGCTTTATCCCAGATTCAGATAAAATAGTCACATGTACTGGACACCATCAGGTGCGCGTGTACGACCCCTCGACGTCTCAGAGGAGGCCGGTGATGGAGGCTCAGTTTGGAGAGTACCCGCTCACAGCGCTCTCTCTTCCTGCCAGCCAGGGCACAGTGGTCGTGGGCAACACTCACGGAGAGCTCGCCATCCTTGACCTCCGGAAAGGGCTTGTGCGTGGGTGTCTTAAGGGTCTGGCAGGGGCAGTGCGGGGGTTGCAGTGCCATCCTTCCCTCCCATTGGTGGCCTCTTGTGGTTTAGATCGTTTTCTTCGAGTACACAGCCTGGAGGACCGTTCCTTACAACACAAGGTATATCTGAAGTCACGACTCAATTGTGTGCTACTCTCTAGCAGAGAACTGGAGTCATCAAGTCCTGATGTTTCTGGAGATGTAGAGGAGGTGAAAGCAGAGGAGGATGAGGTTTGGGATACCATGGAAAAAGTGACGGAGAAGACAAAAAAGAGGACCGCCCAGAAAGACGAAACTGCAGTTATTAGAGTAGACGGAAAAAAGAAAAGAAAACTAGTGAAAAAGTGATGTTAAGTGATTTATAAAGGACATTTTTATTATATTATACACTGTTGATGTAAAACTGTATCAGAAGTGGGCAAAAAGAAACTTAAACCTGACAGAGGATAGTTCACCCAAAAATGAAAATTGTCATCATTTACTTACCTTCAAATTGTTCCAAACCTGTATGAATTTCTTTCTTCTGCTGAAAACAAAACAAGATATTTTGAAGAATGTTGGTAACCATACAGTTGATGGACTTCCATAGTATTGTTTTTTTCCATACTATGGAAGTCAATTGTCTGGTTACCAACATTCTTCAAAATATCTTGTTTTGTTTTCAGCAGAAGAAAGAAATTCATACAGGTTTGGAACAACTTGAGGATGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTAATCCTTTAATACATACATCTACTATATATAGTGTATATAGGGTCATCATTTTGGCCCATGAAGTGGATTTGAACA
>TU488876
ATTCATACAGGTTTGGAACAACTTGAGGATGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTAATCCTTTAATACATACATCTACTATATATAGTGTATATAGGGTCATCATTTTGGCCCATGAAGTGGATTTGAACATTAAATAATCTGAAATGTGATATTTAGATTACCTTTTTAATATGTGAAAAGGTTTATTCCATTGAGATGGAACAAATTAACCTGTTTATGTAAAAACAAAACCAACTTGTCCCATCTATCACTGTATTTCTGAATTAAACAGAATTGAAAGAGTCTGTAGCAGAGCTTTGTTTTTTCAATAATTAGGTTTCAATTGTGTTCAGTTGACTCAAATATACAAAATGTAACAGCAAACTGTCACACATACTTAAAGTGTGCACTTTAGAAAATATTTTCTACAGAAATCTGATCAAATTTGGTTTGTTACATGTTATGTTTTTTGGTCTGTTTTGTGCTTAACATCACATAAAGTAGCATTGTAAACATTCTTTTCCAAGGCCTGTTCAGTATCCCTTTCAAAAATTAATCAGAGGTGCATTTTACTGAAGTAAAAAGAGAATCATGAATCTGTGCTGTCTAAAGACCTTGACTTGACCGTGAATGACCATGCATACCTGTGTTTGTGTGGGTGTGTATTACACATTGCGTTATGCACACTTAAACACACCCTATACCAGCCTCTGATAAGATAAGGGACATCTTGGTAAGCATTTAAACTGTCGACTTTGTAAATGAGAGAATTAGTAGCTAATAACTGATTTAATTTTGAGCATGCTTAGAGGATGAGTCTCTGTTTAAAAAATGTAACATTTGATGTTACAGTGGTGTTATAGGAATGTCCAAG

Function

symbol description
wdr74 Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human WDR74 (WD repeat domain 74).

GO:

id name namespace
GO:0042273 ribosomal large subunit biogenesis biological_process

KEGG:

id description
K14841 NSA1, WDR74; ribosome biogenesis protein NSA1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12583384_12588591.mRNA False 1543 mRNA 0.45 9 12583384 12589064
TU488876 True 868 lncRNA 0.33 1 12588921 12589788

Neighbor

gene id symbol gene type direction distance location
CI01000304_12569155_12569469 NA coding upstream 13650 12569155 ~ 12569734 (+)
CI01000304_12556446_12557806 FAUB, UBIM, FAU coding upstream 25308 12556446 ~ 12558076 (+)
CI01000304_12539537_12551905 VPS51 coding upstream 31133 12539329 ~ 12552251 (+)
CI01000304_12496984_12537562 EHBP1L1B, FRMD8 coding upstream 44231 12496879 ~ 12539153 (+)
CI01000304_12489630_12490940 FAM89B coding upstream 91884 12489582 ~ 12491500 (+)
CI01000304_12601154_12621980 EHD1B, EHD1 coding downstream 11772 12600836 ~ 12621993 (+)
CI01000304_12653236_12670625 CXADR coding downstream 63773 12652837 ~ 12670983 (+)
CI01000304_12718988_12729338 NA coding downstream 129703 12718767 ~ 12729850 (+)
CI01000304_12744525_12773999 NA coding downstream 154995 12744059 ~ 12774312 (+)
CI01000304_12819247_12825161 NA coding downstream 228915 12817979 ~ 12825313 (+)
G425796 NA non-coding upstream 21959 12561074 ~ 12561425 (+)
G425778 NA non-coding upstream 127531 12455493 ~ 12455853 (+)
G425777 NA non-coding upstream 127989 12455181 ~ 12455395 (+)
G425764 NA non-coding upstream 280658 12302340 ~ 12302726 (+)
G425765 NA non-coding upstream 282762 12300413 ~ 12300622 (+)
G425812 NA non-coding downstream 2192 12591256 ~ 12593865 (+)
G425830 NA non-coding downstream 95593 12684657 ~ 12684926 (+)
G425816 NA non-coding downstream 97064 12686128 ~ 12688600 (+)
G425817 NA non-coding downstream 99785 12688849 ~ 12689076 (+)
G425831 NA non-coding downstream 100370 12689434 ~ 12689765 (+)
G425718 NA other upstream 144298 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 2027680 10555216 ~ 10572164 (+)
G424251 NA other upstream 2390489 10188822 ~ 10189404 (+)
G424246 NA other upstream 2456062 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 3017811 9561005 ~ 9565778 (+)
CI01000304_13578347_13595075 NA other downstream 967387 13578049 ~ 13595097 (+)
G426312 NA other downstream 1740984 14330048 ~ 14330886 (+)
G426828 NA other downstream 2359826 14948890 ~ 14950592 (+)
G427860 NA other downstream 3296390 15885454 ~ 15889591 (+)
G428017 NA other downstream 3494166 16083230 ~ 16083714 (+)

Expression


Co-expression Network