CI01000304_13331382_13338351 (RNFT1)


Basic Information

Item Value
gene id CI01000304_13331382_13338351
gene name RNFT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13331382 ~ 13339248 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_13331382_13338351.mRNA
ATGAGGGCAGTGGACATTATCATCCAGAACATCATCAACAAACCTGAATGCAGAGGAGCATATTGCGAGTCTAGAAGAGCGTTTAAACTGAGGGATTCACCTGATCCGATGCAACCCGACCCGAGCCCTCAGGAAGAGAAAAACGGGCTGTCATTAACCCTGCAGCCGGAGCTGCTCGCCCGAATGCCGGGTGCTGGAAGTGCCAGCGGGCCGGAAACGGGCGATGATGTCCGGGTTCCTATCGGCAGCTCATCGGGGTCGACGAATGGACGTGGCGCTACTACGCGAAGGCTGAGAGCGGCGAGCCACAGCCACTCCCATTCTCACGGACACACGCACAGCCACGAACACGAGACGGACAGCGGCGAGTCAGACCTGGAATCCGGAGAGTCCAACAGCTCATTATCAGAGCTCCGCTACCTCCTCCGCTGGCTCAAGAAAAGTCTTCCTTTCATAGTTATTCTCTCTGCGAAACTAGTCATTCAGCACGCTCTGGGTCTGGCTGTTGCAGTGGGTCTGTTTACCACTTTTATGTATGTCAACAAAAGCATTCAAACGCAAGTCTTTCTCCACGACCGAAGGAGGAAGTTGCATTGTGCCTGGCTCTTGCTGTTCCTCACATCCTCCAGTCTCCTCGTGTTCTACACTTTTCACACTCAGTCACTTTATCGCTGCCTCATTTTTGCCAACGCTACGATAGATTCTCAAAACTTCTGGGAGGTCTTATGGAGCGTTGGTGTGACTAACTTCATCGTGAAGTTTTTCTTCATGGGGCTCAAGTGTCTTATTCTCCTCGTCCCATCCCCACTCATGACATACCGGCGAAGGGGTCAGTGGTACATGCTCATAGAGGAGATGGGTCAGTTGTATCAGGTGATTGCTCCTGTCCCACTCTGGTTCCGGTATCTGGTCAGCTACGATGAGAAGGACACCTCAGTGGGTCTGACTTTGGGAATCCTGCTAGCCTTGGTCTACCTCATAATGAAGCTTTTGGCACTGTATGGGCTGTCAGGATCATTGCAAAAAACATTACGGACTTTTTTCAGTTCTGAGGTGAATGGAGCTCCAGCCAGTCCAGCTCAGGTTAGAGAGGCAGGTGACATTTGTCCGATCTGTCAGGCTGATTTTAAGCAGCCTCGGGTCCTCGTGTGTCAGCATATCTTCTGCGAGGAGTGCATAGCCCAGTGGCTTAATCAGGAGAGGACCTGCCCCCTCTGCCGCAATATCATCACAGACAAGGTGCACAAGTGGAAAGATGGTGCAACATCAGCTTATTTACAAATCTACTGAACACGCTGCTCACTGAAAGGATGAACAAACAGTGTTGAGACATGTTGAAACATTCGACCAGCAGTGGATCCACAGGATATGTCGATTGTTCCTCTCAAACATCTCAGTTGAGCGAACAGCACTTGTTATAAGGCAATAGTCACTAGAAAAATCGGCAGTTTGAGTTTTTTTATATATATATATATATATATATATATAAATCTTGTCTGAAGGACAAGTGCATTCACCAGCTCTTGTATTATTATTATTATTAATACTATTATTATTATTGTATGTGGAACTCCCTTATTTTTTAATGTTTATAATATATATTCCTATGTGTTCATGCATGCCATTTCTGGTTTGACTAAATTCCTTGTGGGTGTAAGCAAAATGATACCGTGAAATAATGAATCAGAAATTCATGTTTGTCTCCCTTAATCTATTTTAATTTCTTTTTCTTTTCTTTTTTTTTTTGTATGATCCTGTCAGGTACTGTGACTTTTGTAACTGAACTTGTCTTAAACACATTTATGAATCCAATTATAAGGAGTTTTAAAAAATTCTGAACTTTGTGTTCCATTTTAAGTATTCTGGTTTATTCTGCGATAATCTGAATGTGAGGTAATTGCACATGAACTGCTGATTTATTGAATGATGTAGCATTAGAATTTTGTAACCATGTGATTTTTTTTTGTTACTGAACAACACATAATAGCTCTGATACTTTTGAATAAGCAAAATATTACTGTACATGCTATATGCATTTGTACTTCAGGCTCTTCACAGATACATGGTATTTTTCTAATGCTGCACTTAGTGTGATAAACCAAAGAGTTGAAGAAAAAACATCTATTTTAGTACCATCATACAGTATGCAGCTGTATTTTTTTCCAGCATATTTCGATAATTGACCAA

Function

symbol description
rnft1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of ERAD pathway. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human RNFT1 (ring finger protein, transmembrane 1).

NR:

description
Zgc:77306

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_13331382_13338351.mRNA True 2187 mRNA 0.43 9 13331382 13339248

Neighbor

gene id symbol gene type direction distance location
CI01000304_12828251_12839287 NA coding upstream 491391 12827314 ~ 12839991 (+)
CI01000304_12819247_12825161 NA coding upstream 506069 12817979 ~ 12825313 (+)
CI01000304_12744525_12773999 NA coding upstream 557070 12744059 ~ 12774312 (+)
CI01000304_12718988_12729338 NA coding upstream 601532 12718767 ~ 12729850 (+)
CI01000304_12653236_12670625 CXADR coding upstream 660399 12652837 ~ 12670983 (+)
CI01000304_13435609_13438459 PTRH2 coding downstream 96259 13435507 ~ 13438730 (+)
CI01000304_13578347_13595075 NA coding downstream 238801 13578049 ~ 13595097 (+)
CI01000304_13613026_13686604 CBLB coding downstream 273778 13613026 ~ 13686604 (+)
CI01000304_13731299_13731640 NA coding downstream 391994 13731242 ~ 13731650 (+)
CI01000304_13744571_13748279 NA coding downstream 404427 13743675 ~ 13748318 (+)
G426432 NA non-coding upstream 27785 13289725 ~ 13303597 (+)
G426354 NA non-coding upstream 116629 13210695 ~ 13214753 (+)
G426400 NA non-coding upstream 149521 13181633 ~ 13181861 (+)
G426399 NA non-coding upstream 150796 13180374 ~ 13180586 (+)
G426397 NA non-coding upstream 154746 13176406 ~ 13176636 (+)
G426458 NA non-coding downstream 33345 13372593 ~ 13372972 (+)
G426459 NA non-coding downstream 33855 13373103 ~ 13373384 (+)
G426476 NA non-coding downstream 91168 13430416 ~ 13430634 (+)
G426324 NA non-coding downstream 104029 13443277 ~ 13444447 (+)
G426382 NA non-coding downstream 114086 13453334 ~ 13455351 (+)
G425718 NA other upstream 892296 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 2775678 10555216 ~ 10572164 (+)
G424251 NA other upstream 3138487 10188822 ~ 10189404 (+)
G424246 NA other upstream 3204060 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 3765809 9561005 ~ 9565778 (+)
G426312 NA other downstream 990800 14330048 ~ 14330886 (+)
G426828 NA other downstream 1609642 14948890 ~ 14950592 (+)
G427860 NA other downstream 2546206 15885454 ~ 15889591 (+)
G428017 NA other downstream 2743982 16083230 ~ 16083714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location