CI01000304_14179009_14221165


Basic Information

Item Value
gene id CI01000304_14179009_14221165
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14179009 ~ 14223133 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_14179009_14221165.mRNA
ATGAATTCATCTCTAAAGGGCTGCTTGAGCCAGCATGTCTGCCCCAAAGGCCTGGTCCCATTGTACAAGCAGGTAAATGGGACAGAAATTGAATATGAATTTGAAGAGATTACATTAGAGCGGAGGCGATTGCTGTGCCAAACTGTAAACACTGATGAGTCATGGGTAGCAAAGTGCACCTCTTACAAAAATAACGTTACGCTTCTCTCTTTCTATTCAGTTTGTTGTGGTTCTGTTAGTCAGGCTCTTTTCACTGAGGCAAAGGGTAACTCAGGGTTGGGGTTTAGTATAGCGGGTGGTACAGATAACCCTCACATCGGTGATGATCCCGGGATCTTCATCACGAAGATCATCCCTGGGGGAGCGGCGGCTGAAGACGGCAGACTCAGGTCTGTCAGGGCTTTGAGCATCACCAATCCTCCTCTTGCTAGTTCTCTCCTGGCAAGTTGCGCCACTTCAGCGTTCTGTATTCTGCAAACGTCTTTCCATTCCCCTTCCCCATCCACCCCATATTCTGCATTCTCTCTTTTAAAAGAAGTGAATGACTGTATTTTGCGTGTGAACGAAGCAGATGTCTCGGAGGTGTCTCACAGTAAGGCAGTTGAGGCTCTGAAAGCGGCCGGATCGATTGTTAGACTCTATGTGCGCAGGAGGAGACCGATGCTGGAGACCGTCACCGAAATCAAACTCATAAAAGGACCAAAAGGGCTCGGCTTCAGTATTGCGGGTGGTGTGGGAAACCAGCACATCCCGGGTGATAACAGCATTTATGTCACAAAAATCATCGATGGGGGCGCTGCGCAGAAGGACGGTCGGTTACAAGTTGGAGACAGACTGCTTATGGTGAATAACTACACTCTAGAAGAAGTGACCCATGAAGAAGCAGTGGCCATATTGAAGAACACGTCAGATGTGGTATACCTAAAGGTTGGGAAACCCACTAGTGTCTATCTCTCAGACCCCTATGGGCAGCCTGATATCACACACTCATTCTCACCCGCAATGGAAAATCATATCTCTTCCCCCGGTAATAACGGCACTCTGGAATATAAGTCCAGTCTTCCGCCCATCTCCCCCGGCCGATATTCCCCCCTGCCCAGGCACTTGCTGGGGGAAGAGGACATTAACAGGAGAATTGAGCACTCTGTGAAAATCAAAGGTCTAGATGAAGATTATAATATGGAATGGCAGAATGTTGTAGCTGCTAATATCTTTTTTCAGTTCAGAAGCTCGGGAATTGATTGCAAAAATCCCTCGTTAGATGAGATGGAAGGTCACAGGTTTGATTCCCAGCACTTCCAGTTGAGGCCTCCAGAGCCAGTTTACAGCACTGTGAACAAACTGAGTGACCGCGCCCCCTCTCCCCGTCTCTACTCCCCCGTGGAGTTTGATAAAAGCCCCATGCACTCAATCCCCCACTTCCCTCACTATCACGTAGGCCTGCTCCCTGACTCCGAGATCACCAGGGTCTGCTGGTTTTTGATGGTGCTCTTCAAGGGAAAGCGCAGGCAGCAGTTCTATGAAAACGGCCAATTCTGTGTGACCGAGCATCTGTGCAAGACAATTATTAATCAGCATATTTGCCACTTCTGTGCCTCATTTAAGAAACCGTTTGGACTGACCCAAGTGTGTGGATACGTGTGTGCGTGCACGCTTAGTTTGCATGTGTATATTTACAAAGTAGCACAGCGTGTGTCAGCGGAGATGCTGAGCCCTACGGACTCTGATCTGATGTATTACCTGAACTGTGTGTACAGGGAGCCCAGGAAGATCGTTCTGCACAAGGGCTCGACCGGGCTGGGCTTCAACATCGTTGGAGGAGAAGATGGAGAAGGCATTTTCGTCTCCTTCATACTCGCAGGAGGGCCAGCAGACCTCAGTGGAGAGCTGCGGAGAGGAGACCAGATCCTATCCGTTAATGGAATCGATCTGCGAGGTGCCACTCATGAACAAGCTGCAGCTGCACTGAAAGGAGCGGGGCAGACGGTAACCATCATCGCCCAATACCGGCCCGAGGAACTTGCCCTGTGCTCCCCACGCCGGGCCCAGCCTCCAACTGCAGGTTTGTGCCATGTGATCAGCACCTGGGTCAAAAGCAGTACCACACAAACAGACTGCACAGAGCTAGACCACAAAATAAAAGACTTGATCGCTATAACTGCATATTTTACAGTTCCTTTGTTTTGCCTTCCTATGAGGCTTTGGGATCTCCAGGACAGTTGGAGCATCTGAAGGTCTGGGTTCAGAGCCCAGGTTCTGTCTAACTCTCTGCAGTCTGTCTGAGAAATGTGGTCTCATTCTTGCCCCAGTGGCGGCTCTGACCATGGGCCTTTCATTCAGGGGAAGGGACAGAGAGAGACCTTGCTCTCCTGATATTCCTGTGTGCATCCTGTGTTACCCCTGCCTGCTGCCTCACTTGATAAACTCCTCGGCTCCTGTTGTTTGTTTTTGGCTCTAACCCACCCGTCAAACACAGACGGCTGCTATACATACTCATCTAGATATTAATACTGAGAATTCAAGACATATTAACATTTTTGTTACATTTGGAATCCATGATAGATTTATTTTTTAGGATTCCCTGATGAATAAAAAGCTGAAAAGAACAGCATTTAAAATAAAATAAAAATAGTAAAGACTTTAATAATGTTACAAAAGATTTCTGTCACTTTTGATAATAAAAAAAAATAAAAGAAATTTCTTAAAAAAAAAAAAATATTTTGTAGGGTTGTTTAGTGATTATAACCAAGCTAAAGGAGGGGCTGATTCATATGTTACACAATTCAATATGAAACACTGTGAATTATTATTTTACAGTTTCTAGAAGATGTCGTAGCACTGTTATAGATGTTATAGCATTTTTTATTTTATTTTAGTGTTGACATTGCGTATTGAAGTTATTTTTTTCATATATTTATTCAAAACACATGGACACAAATGGACTAAAAAAGGGATAGTTTACCCAAAAATGAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCATAAGACGTTTTGATGAAATCTGAGAGCTTTCTCTCCCTCCATAGACAACTACCACTTTGATGCTTCAAAAAGTTCATAAAGAGATGGTAAAACTAATCCATATGAATTGAGCGGTTTAGTCCAAATTTTCTGAAGATACTCGATCGCATATAAACATAAATATATACATATCACATATAAACGAACATAAACAGAAGCTCAACCGAACTTGAATGATGCGTGAGAACAAACCTCTTGTGGAAGCTCAAAAGTGCTGCATAACACACAACAATGAACCTCATTGGTTCTCGCATGCATCTAGCAAACATTCTAGAGCTTCTGTTTACCACAACTGATGTGTGAGTTGATGAAAGCCTAAATTAAATCTGTTCATCATATAAAGTGATCGAGGCTCTTCAGAAAATTCGGAATAAACCGCTCAATTCTTATAGATCAGTTTTACAGTTTTACGTTTTGAAGCGTCAAGGTTTCAAATGCATAGGCTGTCTATGGAGGGACATCATAAAAAAGATCTTCATTTGTGTTGCGAAGATGAACGAAAGTCTTATGGGTTTGGAGCAACATGAGTGTGAGTTAATGATTTTTGGGTAAACTAACCCTTTAAAGCCACAAAATTAGGCCTTTTACAGTAAGCTATATGGGCTTTACCAGAAGCTAAATTAAGAGCTCAGGGTTCGGGTCAGCAGCCATGCTTGTTTACTGCTCTGCTCACTGTCTCCACTCCTCTCCTCCTCTTCCTCCTTTGACCTTTTCCTCTCCCAAACTACCTGCTGCCCCCTGCTGAAGCCAACACATCCTTTCCAAAACACACAGATCATTCTCACAGAATAGCAGCATGTTAGCCCAGACACAAACACAAACTACTATGGCAGTTTTCTAAACTAATATGTTTCAGCATATTAGTACAGATTTGTATTCGAATTCAAACTATTCTATCAATTGTCACACAACTGTGGCGCCAAAAGTATTTGGACACTTACACCACACTTAAAAATGAAAGAATGTATAAAAAATTAAGTTTGCAGATGCAGCTTGGTATTTTGTATTTAATGCAATAATATTTATTTTTAAGTGTGTCTTAAATGACTAGATACTTTCAAGGGGGCCAAGGTATGTATTAATGCATGTATTATTAAATGAGAAGTAACTCTACACATGATTGAGTGTCCAGTTAGATTAAAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_14179009_14221165.mRNA True 4200 mRNA 0.43 17 14179009 14223133

Neighbor

gene id symbol gene type direction distance location
CI01000304_14131633_14155156 NA coding upstream 23731 14125318 ~ 14155278 (+)
CI01000304_14108490_14112755 NA coding upstream 65948 14108490 ~ 14113061 (+)
CI01000304_14011581_14044797 NA coding upstream 134049 14011326 ~ 14044960 (+)
CI01000304_14005720_14006514 CREBZF coding upstream 172149 14005720 ~ 14006860 (+)
CI01000304_13989055_14004354 SYTL2A coding upstream 174483 13989055 ~ 14004526 (+)
CI01000304_14231227_14261460 NA coding downstream 7940 14231073 ~ 14262163 (+)
CI01000304_14304022_14317252 HYOU1 coding downstream 80889 14304022 ~ 14318025 (+)
CI01000304_14331169_14331855 HIST1H2AD.L, HIST2H2AB, H2AFX.L, HIST1H2AH, HIST1H2AJ coding downstream 107931 14331064 ~ 14331973 (+)
CI01000304_14352375_14355516 HSP70, HSP7C, HSPA8, HSPA1L.S coding downstream 129242 14352375 ~ 14355516 (+)
CI01000304_14356867_14373980 NA coding downstream 133453 14356586 ~ 14374666 (+)
G426352 NA non-coding upstream 55528 14115749 ~ 14123481 (+)
G426375 NA non-coding upstream 83387 14085038 ~ 14095622 (+)
G426362 NA non-coding upstream 116965 14051748 ~ 14062044 (+)
G426307 NA non-coding upstream 200847 13976965 ~ 13978162 (+)
G426343 NA non-coding downstream 12744 14235877 ~ 14241431 (+)
G426379 NA non-coding downstream 51344 14274477 ~ 14288222 (+)
G426675 NA non-coding downstream 173250 14396383 ~ 14396619 (+)
G426676 NA non-coding downstream 175416 14398549 ~ 14398910 (+)
CI01000304_13578347_13595075 NA other upstream 600162 13578049 ~ 13595097 (+)
G425718 NA other upstream 1739923 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 3623305 10555216 ~ 10572164 (+)
G424251 NA other upstream 3986114 10188822 ~ 10189404 (+)
G424246 NA other upstream 4051687 10116343 ~ 10127322 (+)
G426312 NA other downstream 106915 14330048 ~ 14330886 (+)
G426828 NA other downstream 725757 14948890 ~ 14950592 (+)
G427860 NA other downstream 1662321 15885454 ~ 15889591 (+)
G428017 NA other downstream 1860097 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 2281729 16504764 ~ 16513625 (+)

Expression


Co-expression Network