CI01000304_14331169_14331855 (HIST1H2AD.L, HIST2H2AB, H2AFX.L, HIST1H2AH, HIST1H2AJ)


Basic Information

Item Value
gene id CI01000304_14331169_14331855
gene name HIST1H2AD.L, HIST2H2AB, H2AFX.L, HIST1H2AH, HIST1H2AJ
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14331064 ~ 14331973 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_14331169_14331855.mRNA
GTATAAATACCAATCCCTGCTTACATCATAAGCGAAAGCGCATTTGACTACCAACACTAAACACGACGTTACTAGCCAAACAGGCCGTTCCTTTGTTGTCAAAACATGTCTGGAAGAGGTAAAACCGGTGGGAAGGCCCGCGCAAAGGCCAAGTCTCGTTCATCCAGAGCTGGACTTCAGTTTCCAGTCGGACGTGTACACAGATTATTACGCAAGGGAAATTACGCCGAGCGCGTAGGCGCAGGAGCCCCCGTGTATTTGGCCGCTGTCCTGGAATACCTAACTGCTGAGATCCTCGAGCTGGCAGGCAACGCAGCCCGAGACAACAAGAAAACAAGAATCATCCCCCGTCACCTGCAACTGGCTGTCCGCAACGACGAGGAGCTCAACAAGCTTTTAGGCGGCGTTACCATCGCGCAGGGCGGAGTGCTTCCAAATATCCAGGCAGTGCTGCTGCCCAAGAAAACCGAGAAGCCTGCCAAGAGCAAACGCACTCCCTCACACAAGAAGAGACCTACACCACCACTGGCCATAAATGGCCATGGGACATTTAACCTGCCATCACGGTGGACTATCCTTGCTGAAAGAAAAACAAACAAAACAACTCCATTTGCGGGGTGAATGAACATTTAGTAGTTCATTGTATATGGACCAATGTTGGTTACATTTTATTTGTCACCGCTTTAAATTACATGCAAGTCATGTCCTTTATCTGCTGTTCAGTGTTTATGTTGTTTCA

Function

symbol description
hist1h2ah Predicted to enable DNA binding activity and enzyme binding activity. Predicted to be involved in chromatin silencing. Predicted to be located in nucleus. Predicted to be part of nucleosome. Orthologous to human H2AC11 (H2A clustered histone 11).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_14331169_14331855.mRNA True 739 mRNA 0.49 2 14331064 14331973

Neighbor

gene id symbol gene type direction distance location
CI01000304_14304022_14317252 HYOU1 coding upstream 13039 14304022 ~ 14318025 (+)
CI01000304_14231227_14261460 NA coding upstream 68901 14231073 ~ 14262163 (+)
CI01000304_14179009_14221165 NA coding upstream 107931 14179009 ~ 14223133 (+)
CI01000304_14131633_14155156 NA coding upstream 175786 14125318 ~ 14155278 (+)
CI01000304_14108490_14112755 NA coding upstream 218003 14108490 ~ 14113061 (+)
CI01000304_14352375_14355516 HSP70, HSP7C, HSPA8, HSPA1L.S coding downstream 20402 14352375 ~ 14355516 (+)
CI01000304_14356867_14373980 NA coding downstream 24613 14356586 ~ 14374666 (+)
CI01000304_14695603_14740389 NTM coding downstream 363630 14695603 ~ 14741079 (+)
CI01000304_15034188_15038152 TMEM218 coding downstream 700244 15032081 ~ 15038498 (+)
CI01000304_15040739_15045239 NA coding downstream 708579 15040552 ~ 15045257 (+)
G426379 NA non-coding upstream 42842 14274477 ~ 14288222 (+)
G426343 NA non-coding upstream 89633 14235877 ~ 14241431 (+)
G426352 NA non-coding upstream 207583 14115749 ~ 14123481 (+)
G426675 NA non-coding downstream 64410 14396383 ~ 14396619 (+)
G426676 NA non-coding downstream 66576 14398549 ~ 14398910 (+)
G426678 NA non-coding downstream 68571 14400544 ~ 14400954 (+)
G426679 NA non-coding downstream 69321 14401294 ~ 14401558 (+)
G426680 NA non-coding downstream 71554 14403527 ~ 14403744 (+)
G426312 NA other upstream 178 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 752217 13578049 ~ 13595097 (+)
G425718 NA other upstream 1891978 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 3775360 10555216 ~ 10572164 (+)
G424251 NA other upstream 4138169 10188822 ~ 10189404 (+)
G426828 NA other downstream 616917 14948890 ~ 14950592 (+)
G427860 NA other downstream 1553481 15885454 ~ 15889591 (+)
G428017 NA other downstream 1751257 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 2172889 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 2423973 16761372 ~ 16765057 (+)

Expression


Co-expression Network