CI01000304_14377465_14379055 (BSX)


Basic Information

Item Value
gene id CI01000304_14377465_14379055
gene name BSX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14376532 ~ 14379055 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_14377465_14379055.mRNA
ATGCCGACTCAAAGGTCAACATCGTTCTTCATTGAAGATATTTTACTACATAAGCCTAAACCTTTGCGAGAGGTGTTTCCCTCGCCCTTTTCAAACTCTCTTGCCTCACGGATGCCTCTTTTAGAGTATGGATATCCCCTTATGCCTACACCGATCCTCGCTCCTCATCCGCATCATCCACTTCACAAACCTGAACACCATCCGTACTTTTTCGCCTCCGGAATGCAGATGCCTGCGTTATTTCAGCACCATCCGGAATTACCAGGGAAGCACTGCAGACGCAGAAAGGCCAGAACAGTGTTTTCAGACTCACAGTTATCAGGACTCGAGAAAAGGTTCGAGATCCAGAGATATCTGTCCACACCTGAGCGCGTGGAACTGGCTACGGCGCTCAGTCTATCGGAAACACAGGTAAAGACGTGGTTTCAGAACCGGAGGATGAAGCATAAAAAACAGCTGAGGAAAACACAAGACGACCAGAAAACCCCAAATGATGTAGACAGATCGCTGGAGAACACGAGCGAGAGCGAAATGCACGAGAAAAGTACAGACGGTAAAAACGGCATGAGTCCGGACAGATACACGCTGGACGACAATGAAGATGATGTCGATATTGAAGATGACATTTGCTCTCCTGAACATTTACTCTAGTATTATCACCCCCATGAACAAAACAATTACATATTAATTACAATCTTTTAGATAGGAAATGATATATAGTTTTTTTTATTATTATTATTATTTTGAAAACATCAGTCTATATATTGTTCAAGCGCTTAAGAATTTTTGGACAGCTGAAGGACATACAAATTATTCGTGTGTTTTCAGCATTATTATTATTATTATTATTATTATCATTTATCACAATAGTCATGGCTTTGTGACTGACCATTTTTGTAAATGTGGAATGAATGGTACGTAATGTACTGACAATCTGTAAATAGATTTACTTGATAAATAATCATTCAAGAGATGTAACAATTAATTTTCATTCCAATTGAAGTGTAACATTTTACATTTTCAGCACTTTCGCGGGATGATATTGGTTGTTTGGCATGTGGACTGACATATTTATGAACTCTAAAGCTGTGACTTGTCATTTGTTAAAACAAATAATGTATATAAACAATGTACATTGAGTGAATTATCTAAGACAATTCTTAAACGAGCTGCTTCTTCTTTCTTTGTGCTTTGAAAGCATATGAATCCAACATTTCATTAAATTCATGAAAGCTGCGCGTTATCACAATTCACTCTTAAAAATAAAGGTTCTTTATTGTCATCGATGGTTCCATGAAGAATCTTTAACATCCATGGAATCTTTCTATTACACAAAATGTTCTTTACAGTGGAATAAAAAAATGTTCTTTAGATTATTAAAATGTTGTTCACACTGAGAAAAAAAATGGTTCTTTTAAGAAAGTTTTTTTGGGGAACCAATGGTTCTTCATCGCTGAGAAAAAACCCTTTTGGAACCTTTATTTTTAAGTGTAGAGTAACGAATGATCCTGGTTATTAGGCTACATAACAACAGTAATAATAACATTAACAGTCACTAAATAAGAGTAATATTGGCCAAATAAA

Function

symbol description
bsx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pineal gland development. Predicted to be located in nucleus. Is expressed in forebrain. Orthologous to human BSX (brain specific homeobox).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_14377465_14379055.mRNA True 1584 mRNA 0.36 3 14376532 14379055

Neighbor

gene id symbol gene type direction distance location
CI01000304_14333374_14339329 ZPR1 coding downstream 36414 14333182 ~ 14340118 (-)
CI01000304_14330462_14330842 NA coding downstream 45640 14330079 ~ 14330892 (-)
CI01000304_14318806_14323940 NA coding downstream 51750 14318639 ~ 14324782 (-)
CI01000304_14296254_14303852 VPS11 coding downstream 72650 14295795 ~ 14303882 (-)
CI01000304_14286960_14294449 NA coding downstream 82083 14286960 ~ 14294449 (-)
CI01000304_14381274_14385770 LIM2.1 coding upstream 1943 14380998 ~ 14385770 (-)
CI01000304_14753489_14803322 OPCML coding upstream 374434 14753489 ~ 14803322 (-)
CI01000304_14834446_14835469 NA coding upstream 455359 14834414 ~ 14835549 (-)
CI01000304_14949765_14955677 PANX3 coding upstream 570132 14949187 ~ 14955677 (-)
CI01000304_14957226_14983228 PKNOX2 coding upstream 577548 14956603 ~ 14983228 (-)
G427424 NA non-coding downstream 12217 14364021 ~ 14364315 (-)
G427342 NA non-coding downstream 20722 14351932 ~ 14355810 (-)
G427341 NA non-coding downstream 44132 14331073 ~ 14332400 (-)
G427345 NA non-coding downstream 58489 14305217 ~ 14318043 (-)
G427309 NA non-coding downstream 139454 14181932 ~ 14237078 (-)
G427434 NA non-coding upstream 16489 14395544 ~ 14395824 (-)
G427570 NA non-coding upstream 363927 14742982 ~ 14743303 (-)
G427574 NA non-coding upstream 464522 14843577 ~ 14843800 (-)
G427575 NA non-coding upstream 464990 14844045 ~ 14844379 (-)
G427579 NA non-coding upstream 477920 14856975 ~ 14857243 (-)
G427423 NA other downstream 14640 14361448 ~ 14361892 (-)
CI01000304_14265881_14269102 NA other downstream 106961 14265476 ~ 14269571 (-)
G427154 NA other downstream 425984 13931791 ~ 13950548 (-)
G427376 NA other upstream 879909 15258964 ~ 15261405 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 2400309 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 2475510 16854565 ~ 16860911 (-)
G429331 NA other upstream 3544808 17923863 ~ 17924684 (-)
G429499 NA other upstream 3858664 18237719 ~ 18238319 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002852 bsx coding NC_007121.7 CM002894.2 29890535 ~ 29892486 (-)