CI01000304_15132805_15136196 (ROBO3, ROBO2)


Basic Information

Item Value
gene id CI01000304_15132805_15136196
gene name ROBO3, ROBO2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15132227 ~ 15136196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15132805_15136196.mRNA
ATGGGAACTCTGAAGACTCAGGGATCTCGGCCCAGGCTGGAGGATGCTGCGCCACGGATTGTCGAACACCCCTCAGACCTCATTGTTTCCAAGGGTGAGCCCGCCACTTTAAACTGTAAGGCCGAAGGTCGGCCGACCCCCATGGTGGAGTGGTACAAAGATGGCGAGCGAGTCGAAACGGACCGGGAGGATCCGCGTTCCCACCGTATGCTCCTCCCCAGTGGCTCCCTCTTCTTCCTCCGAATCGTTCACGGAAGGCGCAGCAAGCCCGACGAAGGGGTGTACGTGTGCGTAGCGAGGAATTACTTGGGCGAAGCCGTCAGCCGCAATGCCTCTTTGGAGGTCGCAAAATCATTTCTAGGTGGCCTGCAGAACTTAAATGGCGTCGTCAAAGGACAGATCCTTCACCTGCTCGAGTATTTCACCATCTGCTCTGAGATATCAGCGAGACATAATAGTCCCTATGTTCTGGCACTGCTTGGAAAGAATTGCACTATTCTCACACAATTCAAAGTCAGAACGCAGATTCGGTTTCCAGCTACTCATAAATCCTGTCTATGAAATTCCTCTTTCGTGCATTCTCATTGCAAATTGCTCTAAAACCCAAATCATTTGCAATTCAGTCACACTCAGCTGTCTAATTAGGATCTGAACCTCCATGTTGAGCTCCAACGTGATTTATCATGCCTGCTGCAATATCTTTATTTAAAAGGGAAAGCAAAGAAACCATATTACTTTTGATGTTTACAGGATTAATTGAAGCTGCAGCTCTCCAAAGCTTCAAATAACAGTTATTTACTGCATGATAATATTTATTCTGATTCAGATTGGATATCTTTTTAGTTAAATTTTTATTTCTTCTTTCTTTTCAGGGGAGGTTACAAGCAGTGGGAGTTATATTTCTCTCATATTTCCATATCAAAAAAAATATTTGATTTTTCAGATTGGATTTGAACAATAACTCCATTCAGTTATAGGACTGACTGCTTGATGATATTACCAAAGCCATTAACCTACATTTCAGATTCATTTATTAGTGATATCCGGCGCCTAACAGACACCTTGCGGTTTCAAAACTCTGAGTTCATTGTAAGTTCATGATCCATGAGGGTTGCAGAACAGATGGTCTGTTGAATAAA

Function

symbol description
robo3 Predicted to enable cell-cell adhesion mediator activity. Acts upstream of or within axonogenesis and determination of ventral identity. Is integral component of plasma membrane. Is expressed in several structures, including EVL; digestive system; fin; nervous system; and neural tube. Orthologous to human ROBO3 (roundabout guidance receptor 3).
robo2 Predicted to enable axon guidance receptor activity. Acts upstream of or within several processes, including axon development; regulation of extent of cell growth; and sensory perception of touch. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; dorsal fin; nervous system; spleen; and trigeminal placode. Human ortholog(s) of this gene implicated in vesicoureteral reflux. Orthologous to human ROBO2 (roundabout guidance receptor 2).

GO:

id name namespace
GO:0030154 cell differentiation biological_process

KEGG:

id description
K06754 ROBO2; roundabout, axon guidance receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15132805_15136196.mRNA True 1139 mRNA 0.44 3 15132227 15136196

Neighbor

gene id symbol gene type direction distance location
CI01000304_15075003_15110723 ROBO3 coding downstream 21231 15074301 ~ 15110996 (-)
CI01000304_14957226_14983228 PKNOX2 coding downstream 148999 14956603 ~ 14983228 (-)
CI01000304_14949765_14955677 PANX3 coding downstream 176550 14949187 ~ 14955677 (-)
CI01000304_14834446_14835469 NA coding downstream 296678 14834414 ~ 14835549 (-)
CI01000304_14753489_14803322 OPCML coding downstream 328905 14753489 ~ 14803322 (-)
CI01000304_15322368_15331609 FEZ1 coding upstream 185594 15321790 ~ 15331739 (-)
CI01000304_15341701_15346353 VPS26BL, V26BL, VPS26B, V26BB coding upstream 204369 15340565 ~ 15347178 (-)
CI01000304_15584327_15694046 UVRAG coding upstream 448131 15584327 ~ 15694046 (-)
CI01000304_15703390_15711806 DGAT2 coding upstream 566976 15703172 ~ 15712119 (-)
CI01000304_15715861_15722546 MOGAT2 coding upstream 579228 15715424 ~ 15722546 (-)
G427588 NA non-coding downstream 216556 14915463 ~ 14915671 (-)
G427583 NA non-coding downstream 270359 14861400 ~ 14861868 (-)
G427579 NA non-coding downstream 274984 14856975 ~ 14857243 (-)
G427575 NA non-coding downstream 287848 14844045 ~ 14844379 (-)
G427574 NA non-coding downstream 288427 14843577 ~ 14843800 (-)
G427631 NA non-coding upstream 58080 15194276 ~ 15194659 (-)
G427632 NA non-coding upstream 67068 15203264 ~ 15203501 (-)
G427657 NA non-coding upstream 139020 15275216 ~ 15275669 (-)
G428340 NA non-coding upstream 329729 15465925 ~ 15466511 (-)
G428376 NA non-coding upstream 351183 15487379 ~ 15487595 (-)
G427423 NA other downstream 770335 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 844623 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 862656 14265476 ~ 14269571 (-)
G427309 NA other downstream 923928 14181932 ~ 14237078 (-)
G427154 NA other downstream 1181679 13931791 ~ 13950548 (-)
G427376 NA other upstream 122768 15258964 ~ 15261405 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 1643168 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 1718369 16854565 ~ 16860911 (-)
G429331 NA other upstream 2787667 17923863 ~ 17924684 (-)
G429499 NA other upstream 3101523 18237719 ~ 18238319 (-)

Expression


Co-expression Network