CI01000304_15341701_15346353 (VPS26BL, V26BL, VPS26B, V26BB)


Basic Information

Item Value
gene id CI01000304_15341701_15346353
gene name VPS26BL, V26BL, VPS26B, V26BB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15340565 ~ 15347178 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15341701_15346353.mRNA
ATTTGGCACTTATCCGCCTGTCAAATAATCTATATACACTGTATCTTGTTGGACTTGGTTTCCTAAATTTGTACTAAGATGCTTTATGTTTTCAACAAAGCATACGTGTGTGGCAAAGTCAGTGTGTGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGACCCGTGCTCATGTAGAGTTGTGCTGTCAGTTGCTCACTAGAGGGAGACATTTTAATTACACTGAAGTGACACCGAGTTTTAGAGCGGGGTGCATCATTACAGTTTTTAAATGAAGACAATTTTGTCAGCATTTTCAAACACACGGTTTCACTCTCAAGTGAGAATAGTAGTTAATTTAATATCACATTTTCCTAATGGTTTAACCACCTATGTATCAGCTAATAGTGTCCAATATTTAAGTTATTAAATAACATTTTGTGTGCACCAGATTATTAAAAACTAAAATAATTTAAATCCTCTAATACGTACAGTTGCCCTTTGATAAATTAAATTCGATTTGTTGCATTTTATTTCAATAGTCGCTATAAGACTTTTATTTTGAAAAACATATTTACGTGGACTATCCCGGAAGTAAAATCATTTCTGAAGCTTGTGTGTTTGTACATTGCTGAAAATCCTCCGCAGGTATTAATACAAGAGCCATATGAAGAATTAGCTAAATTTAATCATAAACAGTCTATTATAAACGTACATGCGTTGCAGAAGATAAAGCAGCTAGCTTGTGAAGAAGACGCAATAGTATTGATGTGGAATTGGACCAGGTGTTAGAATACAAAAGGATTCCAGTCCAGCACAAGGTGTCGGGATGAGCTTCTTCAGTTTTGGACAAAGTGCTGAAATTGACATAGTTTTAAATGATGCAGAGACGAGAAAAAAGGCCGAGCACAAAACAGAGGACGGGAAAAAAGACAAATACTTTCTGTTTTACGACGGGGAGACAGTCTCTGGGAAAGTCAACGTAACCCTGAAAAACCCAGGGAAGCGGCTTGAGCATCAAGGGATCAAAATAGAATTTATCGGGCAAATCGAATTGTACTATGACAGAGGAAACCATCATGAGTTTGTCTCTCTGGTAAAGGATTTAGCTCGGCCTGGAGAAATGGCTCAATCTCAGACCTTTGATTTTGAGTTCACACACGTGGAGAAACCATACGAGTCCTACACAGGCCAGAATGTAAAACTGCGCTATTTCCTGAGGGCAACCATCAGCAGGAGACTGAATGACATCTGCAAAGAGATGGACATCGTAGTGCACACACTCAGCACTTATCCAGAACTCAACTCCTCCATAAAGATGGAAGTGGGAATTGAGGACTGTCTTCACATTGAGTTTGAGTACAACAAATCCAAGTATCATCTGAAAGATGTGATTGTGGGAAAGATCTATTTCCTATTGGTGCGAATTAAGATCAAACACATGGAAATTGATATTATTAAACGGGAGACAACGGGAACAGGGCCAAATGTGTACCACGAAAATGACACCATTGCAAAATATGAGATTATGGATGGAGCACCTGTCCGAGGTGAATCCATCCCCATCCGTCTTTTTCTGGCTGGGTATGAGATGACACCCACCATGAGGGACATTAATAAAAAATTCTCTGTACGTTATTACCTGAATCTCGTACTCATTGATGAAGAAGAGCGACGTTACTTCAAACAACAGGAGATTACACTATGGAGGAAGGGAGATATTGTGAGGAAGAGCATGTCCCATCAGGCTGCCATCGCCTCCCAGCGCTTCGAGGGCTCGGCAAGCTCAGAGAAAGCACTCTCTCAAGCTAAAGAGGACAGCAACTAAACCCAACCATGTCAGCTCATCATCTCATGTGTGTATGTGTTAGAGAGAGAGTGTGTGTGTATGGATTTCAAGAAGGCGTGTGCTCTCAAAATAGATTAAGCAATGTAAACATGATATTTCACATTCCTAAACATTACAGTTTATGATCAACAAGTTCTTAAGTAGCTTTTAAAAAAGGGATGAATGTGAAAAGCAAAAACACTGATTCCAAAAACCATGATTCGATATTTACAAATTCTTGCTGGCGGTTCCTCTGAGATAGTTTACTTTTTTTTGTCCGCCACCCTGGAATTAATTGATTGATTGTATATTTAATTGAAACATTTCAGCAGACCATCTAGACAACACAAACTCATTCCACACTCTATATTCCACTTACAGCCTTTTTTAAAATCTGTATTGAATGTTTTGTTATTGTAGATTTTTTCTTTCATAACATATACATTGCATACAGTGTTCAGCTTGTTTTCTAATGAAATGGTATTTAACTAATTCATATTTTTAGTGATTTTTGTTTTTTTATACAGTATGCTTACCGATACATGCCTTTTTACTTTTTGTTGCCATTCCCGAAGATAAATTATAAGCACTTCAGGGTTCTTGCCAATGTGATTTCAGTGTCTCAGGAGGAACCTCCATATCAGCTTCAAATTAATCACACATTTCTGTTTAGATTCAACTAACAAACCAAATTAATTTCCCTACAAGTATGTAGCTGAACTGAAATTTTATTTTCATTTTAGGGTCTGTTGGTTTGTATTGACATCATAATACTTTACCAAGCTCCTTGCCATGTTTTTAAATGTAGAAAAAATTGAAATTTAATTCAGTATTATTGCTGTTGAGGTTTAATTATGTGAAACCAAAATGTTTGACGTTGGTTGCGGTTTTTGGTTAACACTTTACAATAAGGTTAACTATTGAACAACCATATTTTAAAGTGTTACTAAGTTGTCACAGGCTGTTTTGACGTTTAATGTTCTTGAACTTAGGAGGCATTAATGTCTTATTTTTGTTCTCATTTTTACCAACACTGGAGATCAGCTCTCATATTACATGTCATAGCTCTTATCTTTTACTAACCAAAACATAAAATCTTGGAAATCTTTGACCATAACAGTGCAAATGCTAATAAA

Function

symbol description
vps26bl Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26, retromer complex component B).
vps26b Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26, retromer complex component B).

GO:

id name namespace
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15341701_15346353.mRNA True 2960 mRNA 0.37 6 15340565 15347178

Neighbor

gene id symbol gene type direction distance location
CI01000304_15322368_15331609 FEZ1 coding downstream 8826 15321790 ~ 15331739 (-)
CI01000304_15132805_15136196 ROBO3, ROBO2 coding downstream 204369 15132227 ~ 15136196 (-)
CI01000304_15075003_15110723 ROBO3 coding downstream 229569 15074301 ~ 15110996 (-)
CI01000304_14957226_14983228 PKNOX2 coding downstream 357337 14956603 ~ 14983228 (-)
CI01000304_14949765_14955677 PANX3 coding downstream 384888 14949187 ~ 14955677 (-)
CI01000304_15584327_15694046 UVRAG coding upstream 237149 15584327 ~ 15694046 (-)
CI01000304_15703390_15711806 DGAT2 coding upstream 355994 15703172 ~ 15712119 (-)
CI01000304_15715861_15722546 MOGAT2 coding upstream 368246 15715424 ~ 15722546 (-)
CI01000304_15755554_15770449 NA coding upstream 407298 15754452 ~ 15770768 (-)
CI01000304_15782838_15784193 ATG101, ATG101.L coding upstream 435549 15782727 ~ 15784193 (-)
G427657 NA non-coding downstream 64896 15275216 ~ 15275669 (-)
G427632 NA non-coding downstream 137064 15203264 ~ 15203501 (-)
G427631 NA non-coding downstream 145906 15194276 ~ 15194659 (-)
G427588 NA non-coding downstream 424894 14915463 ~ 14915671 (-)
G427583 NA non-coding downstream 478697 14861400 ~ 14861868 (-)
G428340 NA non-coding upstream 118747 15465925 ~ 15466511 (-)
G428376 NA non-coding upstream 140201 15487379 ~ 15487595 (-)
G428377 NA non-coding upstream 140749 15487927 ~ 15488140 (-)
G428378 NA non-coding upstream 141279 15488457 ~ 15488714 (-)
G428379 NA non-coding upstream 142631 15489809 ~ 15490014 (-)
G427376 NA other downstream 79160 15258964 ~ 15261405 (-)
G427423 NA other downstream 978673 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1052961 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1070994 14265476 ~ 14269571 (-)
G427309 NA other downstream 1132266 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 1432186 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 1507387 16854565 ~ 16860911 (-)
G429331 NA other upstream 2576685 17923863 ~ 17924684 (-)
G429499 NA other upstream 2890541 18237719 ~ 18238319 (-)
G429673 NA other upstream 3239264 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002861 vps26bl coding NC_007121.7 CM002894.2 31800212 ~ 31805923 (-)