CI01000304_15462162_15465511


Basic Information

Item Value
gene id CI01000304_15462162_15465511
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15462162 ~ 15465511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15462162_15465511.mRNA
ATTACTACTATTCAGAGTAACAAGGAAAACACTAAACCTGTGTGTGGTCCAAAAAAACAAGTCAGCAGTATTGTATCAAAACAAAGAGTGGTATGTAAATCGGCACCTCTTCAGTCAAAGAATGATCTTAAGGAGGATAACTCTGGAAAAAGAGAGAAGGAAAAGGATGTTAGACCGAAGACCAAAACTAATGATGCTGATCCTACTAAGCGCAACACACTAAGCCAGGCCTTCCGTACGCAGCAGACTGTAAGACACAGAAAGCTTGTGGAAGAAATTCAAAAACCACCTTCTACTGTCTCTGCCATTCAGAAATCCAAACCTGGTACGTATAAGGGCCGTGTGATACAGTCTAAAATCGATTGTTTCAGAAAACCCAGTGGTGATGCGAAGACCACAGAAAACCGGATTTCAAAACCGGACGCGACCAAACCAAAACCTGAATTGCCGAAAGTCCGGTCCAAGTCTGTTACTTCCCTGCCGGCATCCATTAAACCCAGAGTCAACTCTTTGTCATCTAGAACGAAATCTATTTCTGATGTCCCATTGAATGCCACTGAAAAACCAGTCCAGAAGTCAGTTTCTCATAAACAGATACCTCAAAAGGTCCCAGGCTCCATCTCTCAAGCAGGTGCCCCACGGCTTGGTGTTCCTCCCAGGCCAGCTCCTCTAGCTACAGGGCGCTCGGCCACCAGCAGACCCATCATTTCAAAGAAGAAAGAGATGGCGGTGCAAGTGGCGAAACCAAAACCGGCCACCACTGAACAGAATGTCCGCAGACCTGTCACAAGTACAATCAGCCACTACAAAGTGCAAATGGAGACGGCTGAAGAGAGAAGAGCAAAGCTTGCAGAGTGGCTGGCATCTAAGGGAAAGACTCTAAAGAGGCCTCCAATCTCAGAAAAGTCAGCAACCTTTTCACAAAAACCAGCTCCACAGCCTAAAACTGCACCCAAAGCAACAATTAGTGCCCAGTCTGTGCCTGTCATCCAGACTGAGGCTGTAAAACCAACCCCTGCATTGAAGACCAACAACAAAACTGATGATAGTAAAGTCCCTGACAATAAACCAGTGTATTCTAGCGGATCAAACAAAATTATGAATACCACATTAGACTTGCTGGACAACAGTGATATGGATCTGCCAGTCGACCCAGAGATAAGGATGGAGTCGTTGGTGATGAACTTGTGTGATAAATTGGAGGCAATGGAGACACCCTCATCATGTGAAGATGACATAAATGCTGACAAAGCTGATGCATTGGCAGAGGAAAGAATTGAAGAGCAAGTGGAGGAGCATGAAATGGATAAAGTGTTTGAAATTCTGGAAGAGGAAGAACTGGGGGATGAGGAAGACCCAGAGAGTGACATTACAGAAGACACTAAGATGGCTGGCATAAAGAATGAGGATGATGATCAGGAGGCTAAGGAGAAAAAGCCATTTGAGAGTGAAGATGACAGTGATGAGGAGATGAGGAGTGCCACTCCAGAGATGGCAGGAGCATCCATTGTGAAATACAATGTGAAAACAACTCCATATCTGCAAAGTGTGAAAAAAAGAATCGATTGCGAAACTGTACCGGCCAGTGGCTCGCGACGCAAAAGCACCATCAAAGACCTCAAGTTTCTGACACCTGTGCGACGATCAACGCGAATCCAGCGTAAGTCCTCTCGTCTGCCAGGTATGCTGAATGACCATGACACTTGCGTCTCCTCATTGGCTGAGCTGGTACAGATGGATGATGCAGATGCAAGTGCTTACATCTACAGAAAAAACCCAGCACTACTGGAAGACCTGCCTGATCAGCCTGGAGACTTAGAAAAAGTATGCAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15462162_15465511.mRNA True 1833 mRNA 0.46 5 15462162 15465511

Neighbor

gene id symbol gene type direction distance location
CI01000304_15423818_15456305 LHFP coding upstream 5281 15421611 ~ 15456881 (+)
CI01000304_15348138_15379777 FOXO1B, FOXO1 coding upstream 82159 15347958 ~ 15380003 (+)
CI01000304_15315146_15318470 ESAMA coding upstream 142175 15315146 ~ 15319987 (+)
CI01000304_15265823_15269133 MSANTD2 coding upstream 192571 15264968 ~ 15269591 (+)
CI01000304_15231039_15234179 NA coding upstream 227579 15231039 ~ 15234583 (+)
CI01000304_15467093_15471138 PRKRIRA coding downstream 1582 15467093 ~ 15471482 (+)
CI01000304_15472687_15483327 NA coding downstream 7176 15472687 ~ 15483327 (+)
CI01000304_15483378_15486113 NA coding downstream 17867 15483378 ~ 15486386 (+)
CI01000304_15500233_15509862 WNT11, WNT11.L, WNT11R coding downstream 34722 15500233 ~ 15510716 (+)
CI01000304_15723867_15741978 NA coding downstream 258356 15723867 ~ 15742863 (+)
G427721 NA non-coding upstream 1536 15460387 ~ 15460626 (+)
G426931 NA non-coding upstream 120346 15339294 ~ 15341816 (+)
G426933 NA non-coding upstream 128477 15322016 ~ 15333685 (+)
G426951 NA non-coding upstream 206923 15253925 ~ 15255239 (+)
G426941 NA non-coding upstream 239461 15221621 ~ 15222701 (+)
G427723 NA non-coding downstream 24808 15490319 ~ 15490525 (+)
G427737 NA non-coding downstream 77506 15543017 ~ 15543311 (+)
G427739 NA non-coding downstream 85450 15550961 ~ 15551196 (+)
G427746 NA non-coding downstream 101592 15567103 ~ 15567331 (+)
G427748 NA non-coding downstream 102583 15568094 ~ 15568303 (+)
G426828 NA other upstream 511570 14948890 ~ 14950592 (+)
G426312 NA other upstream 1131276 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 1883315 13578049 ~ 13595097 (+)
G425718 NA other upstream 3023076 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 4906458 10555216 ~ 10572164 (+)
G427860 NA other downstream 419943 15885454 ~ 15889591 (+)
G428017 NA other downstream 617719 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 1039351 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 1290435 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1545219 17009769 ~ 17023882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002230 si:ch211-266i6.3 coding NC_007121.7 CM002894.2 32050906 ~ 32058078 (+)