CI01000304_15755554_15770449


Basic Information

Item Value
gene id CI01000304_15755554_15770449
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15754452 ~ 15770768 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15755554_15770449.mRNA
AAAATCCTTTCGAAATTCATTTTAATTCCCACTTCCAGCCCACACTGGCATAAAGGTAAATTGTCAATATCACATATTACACCATACAGTATTGCTGAAAGTGAAATGCTTTTAAAAATGCTATTGATTTTCCACTGTTGTTACAGGAGTCATCTGTGCAGAGCAGTTAAAACAGACTCAAGGGAGTTGATGGGCGTCTGTGGAGAGGGGAAAGGAGCAGGGTTTGCTTCCAACAGTGTACTTGGAGCTCAAAGAGTAACCTGTTCAGTTCACAATGGCTTGGTATGGTTTTTAAAAACGAGAAGCAAGTATATTCAAAATGCATTGGGTTGTTGGTACCTGGTTAATCACATCTCTCCTTGGCCTTGGAATGGGGCATAACACTTTATTTGAAGGATATGACCGGACTCTGTCAGGTTATCATCTGTGTAACGAGACTGAGCTTGTTTCGGTGACCAATGTGATCTCCTATCCAACCTCGTATACCCAGAGGAGACCGTGTGCCTTGAACAGAAGTGCAGAATTCACATCTAAGCCAGGACTGTGTCCCTCAGCAAGTGGGTCTCTGAGGAATAATTCAAACTCTTCTCACTCCATGTGCAAGTGGGACATAGATTGTCCTCATTGGCAAAAATGCTGTCAGACCGAAAACATCTCCAACATCTATCAGTGCTCAGACCCAGTACCACCAGCCAACAGAACCTGCTTCAATGCGACAATAACAGTTAAGACAAACTTTGAGCTACTAACTATGGACAAAGGACTCTTCAACCACACCAGACTACTGCACTCTGTGGTAACTGGCGCTCTGGGAACTGCTGAAATTTCTGTGCATCATGTCTGGTCATGGTCAGCAGGGCCCTTCACAACCTCTTCATCACTGCTGGTTTGTTCTTCTAAAGACTTCTTTCTAGAAGACATCATCTCTACAAGACTGTATCGGTTGGAAAAAATTGAGGAGGTGACTGATGTTGTGGTGCAAGATGTGGATGAATGTGCAGTTCCGGAATTGAACAGTTGTTCTCCACATGCACACTGCATGAATACACTAGGATCTTATTCATGTGCCTGTCATCATGGGTATCATGACCTCAATTCTTCACAGCCAGGAACAGTTTGTATGGCCCCCAGTGTCACTACGCAGCCTTTCATGAACAACACTGTGCCTGTCCCGCCAGATAACAGAACATACACTGATGGAAAACATATGAGTATCACCCCGTCTGGACCATTCTGGACATCCACTGTTGATCTCTCTTCACATTCAAATAATCCTTCCATCAGCCTACCACCTTCTACATGCGACTACATACCTGAGATCACCAGTCTGTTCTCTTATGACATCAATGCATCAACCTTTCATGTGGCATGGACCACCAACAACCAAACCGGGGTCACTTTCAACCTAGTTCTGCTACATGGGACCACTGAGCTGGAAAACGTGTGGCATGTGAGGAACTTTAACTGGACGTTCACAAACCTGGATCCTGCAGTTCTTTATATTGTACGTGTTACTCCATTTGCCTGTGGTATCCGGGGAAACTCCACAGAGATCAAAATTCTTTTGTCTCTAGAGATCCGTGCACTAGTCGACTCTGGACAGGTCATCGTCCGGATAACATCCCTCTCAGCTGGCAGCGTAATCGTGAACTTTTCCATCATATTTCAACCCAACAGCAACCTGAACATGACTAGCGTGTCCAGAAATCTTATTGTGTCTCTACAGGACAGCTCCATATACGTAATAGACAGTAGCAGTATATACATAGGAGATTTAAATGAGTGTTTGGCGCATGAGGCGGACTGCTCTCCATGGGCTTCTTGTGAAAACACTGTTGGCTCATACATCTGTGCCTGTTGGTCTGGATACGACGATCAGAACCCCAGTAGACCAGGACGCAGCTGTTCAGCTTCATCTAATGCCACAACATCGACTGTTAATCCCACGACAAACTATCCTGGAGTATCTTCAAATTCCACTGCCACGAGCACTACAACATCTTCTATTACAATAACTATGATTGGAAACCCATCTATGAGCAGTACAGTGAGCACAGCTCATGTTCAGAGCAACACCAAAACAACAGAGTCTTCGACTTTGGCAAACATTCCTACAACAATACTCGCACCCATAACACAGGACACTGTCAGAATTACAACTTTCAGTCAACAAATTATTGGCCATTTGACCTCATATGTAACTGTTGAGTGCAGCCTAGGGTATATATCAGTCGTCATAAGGCGAGTCATCTTGCAGGTTAATAACATCAATGAGAGTGCCCTGTTCCTCGGTAAACCAGAATGTCGTCTCAGTGGAATAAATGCATCCCATGTGTGGCTCACTACAGCTTGGGATAAGTGTGGTACTACACTAGAGCATAACAGCACCCACAATTCATTTAATGTTACTCTATTCAACAATGCGAGCAGTTCACTGATGGGTTCTATTGTGCATTTGGAAGTTCCCATCATCTGCACTTACCCCAGTCGCATCATTGTCTCCACGGGATACCCCCCCTCAGGGTATTTTAATATGATCAACGACCCAGTGGCAGGATTGGGTAGCTTCCAGGTTACGGTGCGGCTGCTGAATGGGACGTCTCCTTTACCTGAGGATTACGCCTTCTCCCCTGAAGAGGAGGTCATTGTGGAGGTTGGAGTCAACACTACCATCTCCCAAATCAAAGTGGTCATCAGCAAGTGCTGGGCCACTTCAAGCAATGACTCATCAAAGTCACCCGTCTACTTGTTTCTGCAGGATGGATGTGCATTGCCAAACTCGTACACAACTGTTCTTCAGAATGGAAACGACACTGTGTCTTTGCTGTCAGTGCGGATCTTCTCATTCGTGAATCTGGACGTCATCTACCTGCACTGCCAGGTCCAGATCTGTGTCGAAATTCAGGACAAGACCTGCAGACCTGACTGTATGGTGAGGTCATACAGGGCTTCCAACTTAATTGGAGCGACAAAGGCTTCTGTTGGACCCTTAAACAGATTACGTAAAGAAATGCCCCAAAATGATACATCAAATACTCTGCAGACTGTTGGATTTGTTCTACTTGGCGTTGGTGTGTTTCTGTTTTCCCTGGCTGCCATCGCAGGATTGGTGTACCACAAAAGGAAAATCGGGAACTACAACTTTAATTTAAAACCACAGCAGGAGAACTTCAACTATCATGTTTTTAGCACGTAACTGCAATAGTTAACTGTAACCGTAAACTGGGGTATAATTTTATTATTGGATATTACTAATAGGCCTATTACTAAATATTACCCATTACTATTAATATTACTAATATTGGGTACTACTAATAATTTTCCATAGAACATGACAATTAATGGTTTAATTTAATTATATTTTTGTACTAAAAACATACAAACAATCTGCTATAAAAGTAAATCTGTTTTGTTTTTAATTTATTTATTTATTATTATTTGTCAGCACTTTAACACTTAAAGGACTAGTTCACTTTAAAATGAAAATTAGCCCAAGGTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTTCTTCTTTCTGATAAACACTCTCAGAGCTATTTTAATAAATATGAGCTAAAGAAAGTGCTTCCATCCATCATAACCGTGCCAGACCACCTTCTGTATTCAAGTTGCGAAGAAAGTGTAAACTGGCGTCACGTCAGTTACACTTTTTCCGTAAGTTGAATAGGGAAGGCGTAGGACGTAGCGTAAGCTTTTTGAACTGCGAGAGTTTTACACTTTCTTCGTAAGTTGAATACGGAAGGCGGTCTGGCGGAAGCTAGATATTTTACTTAATAACTTTTTTTTTTTTTTACACAAACGCATCGCTTCGCTTCAGAAGCAGAAGGCCTTTATTAACCTCCCGGAGCCGTGTGGAATATGTTTATGATGGATGGAGCCGCTTCAGCTTGTTCTTCAGCTTCATACTCATTTGGTAACGCTTACTTCCATTATAAAGCTTCGATGCGTCAGGATATTTATTAATATTTCTCCTAATGTGTTCATCAGAAAGTCATATACACCTAGGATGGCTTGAGGGAGAGTAAAGCTTGGGGTAATTTTAATTTGAAAGTGAACTAATCCTTTAAAACTACCAAAATACACAGCTTTGTCAGTGCTGGTACTCTCTTAAATACGCCACTAGAGGACGCTGTTGTATTAGCTGTACGTTTTGATACCAGCTTTGGTCTGTTGTCTGTATGTGCTGCACATTTAGTGGCAGATGAAAATGTGACTTTTTTTTTTAATTAGACATATTTTATTAAA
>TU491926
CTATTTTAATAAATATGAGCTAAAGAAAGTGCTTCCATCCATCATAACCGTGCCAGACCACCTTCTGTATTCAAGTTGCGAAGAAAGTGTAAACTGGCGTCACGTCAGTTACACTTTTTCCGTAAGTTGAATAGGGAAGGCGTAGGACGTAGCGTAAGCTTTTTGAACTGCGAGAGTTTTACACTTTCTTCGTAAGTTGAATACGGAAGGCGGTCTGGCGGAAGCTAGATATTTTACTTAATAACTTTTTTTTTTTTTTACACAAACGCATCGCTTCGCTTCAGAAGCAGAAGGCCTTTATTAACCTCCCGGAGCCGTGTGGAATATGTTTATGATGGATGGAGCCGCTTCAGCTTGTTCTTCAGCTTCATACTCATTTGGTAACGCTTACTTCCATTATAAAGCTTCGATGCGTCAGGATATTTATTAATATTTCTCCTAATGTGTTCATCAGAAAGTCATATACACCTAGGATGGCTTGAGGGAGAGTAAAGCTTGGGGTAATTTTAATTTGAAAGTGAACTAATCCTTTAAAACTACCAAAATACACAGCTTTGTCAGTGCTGGTACTCTCTTAAATACGCCACTAGAGGACGCTGTTGTATTAGCTGTACGTTTTGATACCAGCTTTGGTCTGTTGTCTGTATGTGCTGCACATTTAGTGGCAGATGAAAATGTGACTTTTTTTTTTAATTAGACATATTTTATTAAATGTATACTTTACCTGTCTATTAAA

Function

NR:

description
LOC567806 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15755554_15770449.mRNA False 4274 mRNA 0.42 17 15754476 15770768
TU491926 True 736 lncRNA 0.38 1 15754452 15755187

Neighbor

gene id symbol gene type direction distance location
CI01000304_15715861_15722546 MOGAT2 coding downstream 31930 15715424 ~ 15722546 (-)
CI01000304_15703390_15711806 DGAT2 coding downstream 42357 15703172 ~ 15712119 (-)
CI01000304_15584327_15694046 UVRAG coding downstream 60430 15584327 ~ 15694046 (-)
CI01000304_15341701_15346353 VPS26BL, V26BL, VPS26B, V26BB coding downstream 407298 15340565 ~ 15347178 (-)
CI01000304_15322368_15331609 FEZ1 coding downstream 422737 15321790 ~ 15331739 (-)
CI01000304_15782838_15784193 ATG101, ATG101.L coding upstream 11959 15782727 ~ 15784193 (-)
CI01000304_15794739_15795184 NA coding upstream 23712 15794480 ~ 15796217 (-)
CI01000304_15859896_15879052 TRIM37 coding upstream 88349 15859117 ~ 15879376 (-)
CI01000304_15882316_15888812 RABGEF1 coding upstream 110914 15881682 ~ 15888812 (-)
CI01000304_15891065_15894363 KCTD7 coding upstream 120035 15890803 ~ 15894363 (-)
G428451 NA non-coding downstream 2933 15751343 ~ 15751543 (-)
G428450 NA non-coding downstream 3579 15749584 ~ 15750897 (-)
G428432 NA non-coding downstream 180443 15573732 ~ 15574033 (-)
G428385 NA non-coding downstream 237786 15516463 ~ 15516690 (-)
G428382 NA non-coding downstream 243496 15504754 ~ 15510980 (-)
G428411 NA non-coding upstream 30161 15800929 ~ 15806758 (-)
G428405 NA non-coding upstream 268710 16039478 ~ 16042713 (-)
G428517 NA non-coding upstream 351430 16122198 ~ 16122496 (-)
G428519 NA non-coding upstream 358946 16129714 ~ 16130055 (-)
G428500 NA non-coding upstream 361871 16132639 ~ 16137401 (-)
G427376 NA other downstream 493071 15258964 ~ 15261405 (-)
G427423 NA other downstream 1392584 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1466872 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1484905 14265476 ~ 14269571 (-)
G427309 NA other downstream 1546177 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 1008596 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 1083797 16854565 ~ 16860911 (-)
G429331 NA other upstream 2153095 17923863 ~ 17924684 (-)
G429499 NA other upstream 2466951 18237719 ~ 18238319 (-)
G429673 NA other upstream 2815674 18586442 ~ 18591856 (-)

Expression


Co-expression Network