CI01000304_15817532_15846675 (PPM1E)


Basic Information

Item Value
gene id CI01000304_15817532_15846675
gene name PPM1E
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15814649 ~ 15846892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15817532_15846675.mRNA
CTATATAAAGCTATTATCGGCTAATAACGATCAGCACCCGATCAACCGGCGCTCGAACCGGAAAGAAAGAAAGTCATACAAGACATTTGGAATGATATGAGAGTGATTCATTTTTGGGTGAACTATTCCTTTAAACAAGAGGGGCAGTTTGTCAGAGTGTTCCTATCAGAGTAAAGCCAATTTGTCAATCTTCTCTGTTTACAAGGACAGGTATCAGTGCCAGAAACTCTGTCTGTGCAGGGCGATATTATGCATGCTGAGCACACACACACACAAACACAGGCTCTTCCTGTGGCATCAGCAGCAATCGTTGTAGTTTCGACCAGTCAGCTCCCCTCTTCTCCACCTGGGAAGAAGGAATGCATCAGCGACAAGAATGACACATTCTCATTTCTGTGTGTGTGTACTAGCAAGGGAGAGGGGAGAAATAATAGGATAAATAGTTAACTCAGGACATCCCCACTCAAAACAAACATCAAACACTCAAAATCCCATCATGCACCATGACGTAAAGCACCAACGCAATGTTCCAAAAGAAATGTTAATTTAGAAGCAGGCTACGGTGTGGCTTAGTTCAGTGAACCAAATCCACAACTTTATCACTGATTTACCTGAAATTCAGTGTGAGGTCAAAATGCCTTGTATACTAAAAAAGAAATGCCTGTTCCAAGTAGATACATTTTATTTTCAGTTTCTAAGAGTGAGCAAACTGCAAAGTCAACTCTGAACTGAGCAACTACCACACAGTGCCTCTCAATAATTGTCTCCAGTGTGTAATTAGTAAGTCCTGAGGGTAGACTCTCAAGAAAATAATTGCATACTTGATTTGGGCTAAAATATAACATGCATGTTAATTGAGGCTTTTACGGCCCTTAAGATATATGCGTTACGCTTGACGTGCACATCTGATTTCTTTTTGGTACACAAACATTGTAGCATGTATATGTGCAGTTTCTGTAGTTTCAAAACCTAGTACTTTCTACATAGGCAACTTCCTTCTAAGGCATCCTAACTGAAATAAATCCTTATAAGTGGCAATATCATGCACACAGGTGACTTAATTCACATTTGATTCCATTAGAGTTTAATGGCATGTTTCTAAGATAGCAAAATAATAGCATAAAAATATACAACAAATATTTGGAAAAAGTCACAAACAATTGCTGTTTGAATATGTGTGATATCGGAACTCACTATGGTTTGAAACACAGCTAACGTATTCATCATTAAACATGGCTGTGCGACTCTATTTTAAAAGGTTCATTTGAGTAAACTGTTTTACCCCCCTCTGCATTCCAGAGATCTGAACACACCCAAACAATGACATTATCTGGAACAAGAACTGTCTTGTAGACAGTGTTTGTGTAAATCTTTGTGTAATACTTTCTAGGTTAATACCCTCAATGGTTGTTTTTCCTGATCAGCCCAACATGACAACAGTGGCTCAAAAAATGGTGTAAGTTTGGGGTGGTACTATCTGTTTGTCTGACCAATGGAAGACAGGTGAAGTATTCGAGTATTCTGCGTAAAATCAAGTAATTTTTGCAGAGGCTACTGGAGCAGAACTTACACACTTCCACATAAAGTACATTAGTGTGACTGCACTCTTCCATAAAAATGCAGTACTAACAGGGCATGATGATTATTTGCTCATGGCAGTGTCTGTGTTTTGATTTGTGGAGACTCTAATTTGATCGCCTTTATAGATCATTGACGATGAACCCAGGGCATTGCTGTGCATCTCGCTTCCAAAGTCATGGCCTTGTGCTCGCTCATGATGTCTCCTTGCGTAACTCTTAATCAGCAGAGGCGTATTGGCCAAATAGAGCTGGAAAATAGTGCAAATGGTAATCTCTGGATTATGGTGTTAATCCCGGTTTGGAAGACAATAGGAGTCACTGGAAAATTCACATGGCTCACCTCAAGAACTGAGCATCGCCATCGCCATGGAGACAACCTTGGCACAAACGGCATGATTGGCTCGGGCAGAACAAGAAGCCTCATTAACATCCTGGGCAGATACCTCACATTCAAAGATCTTCAAAGACCACATTACGCCCTCTGCCTAGTAGCACCTAGCAACAGATTTGACACGAGCCTGGAGCCACTGCTGGCGACGGTCCTGCCCGAGTATCAGGCCACTGTGTTCTTGCCCTTTTGGAGAATCGGACATAGAGCCGCCTTGCCAGGGAGAGTTGATGCCCAGATGGCATGGCGACCACGTCTGTGGAAAGTTTGGAGGGCTGATGGCCTAGATTCCAACACAACTCTTACTCACTTTGTCGGTAAAGTAACTGCCCTTTCTCCTTGGCGGCAGCTCTGGCCCGTGGTACAGCAGACAGTATTCTGCAAAGCGATCTCTCTGGGTACCATCTCAACAAGAGTGTGGAGGACGGAACAGACACGCTGCCTCTGTTGTGACATAAGAAACAATGGCTGCTTAGTCATCATGAATCAAAGCAGAGTGTTTGTGTTAGCATGTGTAACATGTAACATGTCATTTGCCTTGGCAGAGATTGATTCGGTAAAGCTGGCACGGCTGATCTTTAATAAGCTGTGTGAGACGTGCTGTCATTGGCTAAAAGAGTTCCCGTATCGCCGCCGCCACTTGCCGTACTACGAGACCTCTATCCATGCTATTAAAAACATGCGTCGAAAGATGGAAGACAAACATGTCGTCATTCCTGACTTCAACACACTCTTCAATCTACAGGATCAGGAAGAGCAGGCATTTTTCGCCGTGTTTGATGGTCACGGCGGGGTGGATGCTGCCATCTACGCCGCCAATCACCTACACGTTAACCTGGTCAGACAGGAAATGTTCAGTCAGGATCCGGTAGAGGCCCTGTGTCACTCCTTCAAACTGACAGATAAGCGATTCATACAGAAGGCATCACGTGAGAACCTTCGCTGTGGCACCACAGGGGTCGTGACCTTTCTGAGGGGTCGCACACTGTACGTGGCCTGGCTAGGCGACTCACAGGTCATGATGGTGAGGAGAGGTCAACCGGTGGAGCTAATGAAACCACACAAACCAGACAGAGAGGATGAGAAAAAGAGGATTGAGGCTCTGGGTGGGTGTGTGATCTGGTTCGGCACATGGAGGGTGAACGGCAGCCTGTCCGTGTCAAGAGCCATAGGTGATTCAGAACACAAGCCGTATATATGTGGTGATGCAGACTGCACCGCCTTCAACCTGGACGGCAGCGAGGACTACTTGATCCTGGCCTGCGACGGCTTCTATGACACCGTGAACCCAGATGAAGCCGTGCGAGTGGTCAGTGACCACTTGCAGGAGAACAACGGGGACACCTCCATGGTGGCCCACAAGCTAGTGGCCTCAGCCCGAGATGCGGGATCCAGCGACAACATCACGAGTGAGCTAGTGTGTCAAGACGGAGGGGCAGAGAACGGAGGAAAGAACCGGGGCGGCTGGCCACTCCAACAATGCTCGGCGCCTGCTGACCTGGCCTACGAAGACCGCATGGATTCGTTTACGGACAGAACAAGTCTGAGCATCACAGGGCCGGACATGCGAGCAGAGACTGGCTGCTTCAGGCTCCCAGCTTCATCCGGCCTGCCCCCAATGAGAACCGTCACGCCAGACCTCATACCCCCCTACGGCGGGGCCGGCGCGGCCTGGCGTCCCTACCAAGAGGATGGCCCCACTGGGTACAGGCAAAAGCCCCAGCCTAAACCCACAGTGCCCTCCTACACGCAGACCACCTCAGATGGACAATTGCTGGAGGTGGCTGCGCTCTTCCCTCAGGAGGGCCGGAGGAAGAGGCGGCTGGAGGTCATGCCGCTGAGGAGGGAATCGCAGAGCCTGATTCGGAGGGCCAGAGAAAGCCACGGTCCTCTGAGCTGCTTCCCTAGCGTGCCCTATCCTCTCCGCTCCCCAGAGAGGAAGCCTGGGATAGCCTTTCCCCATGTAACCCACAGCAAAAGGGTCTAATCGACAACTTCCTTGCCCCATCATTCCGCCCTCTGTCCCTGAAGCTAAAACATACTCATGCAGTGGGTGCACGCACACATACATTCACGCACTGTTCCAAAACCTTGTGAGCGCTCTTCATAGACAGCATTTTAAGGTGCCATTCAGATGGAAAAGATACCTCATTTTGGACAAATTCGAAGCGATAGTGAAAAAACTTGGCGGACAAACGAGAGAA
>TU491329
TACAGGTTTTCAGGATTCTTTGATGAATAGAAAGTTCAAAAGAAAAGCATTTATTTGAAATAGAAATATTTCATACCATTATAAATGTCATTACTGTCACTTTTGAAAAATTGTATGTCTTTGCTGAATAAAAGAATTAATTTTAAAAAGATCTTACTGACCTCAAACTTTTGAACAGAAGTAGTACACAAGTCGTATGGACTACTTTTATAATGTGTTTATTGTTTTATGAGTTTTTAAAGCTTGACAGCCCCAGTCTCTCTTCACTTTCATTGTATTGAAAAAAGTGGTCAGGATTTTCATAAAAAATAAGCTTTTGTGTAAGGGTGCTCAGATCAGGGTTTTTGGGGCCGATTACCGATCACTGGAAGCAGTATTGGCCGATACGGATCACCAAAATAAATAATTGTTTTAATTATAACTATTCTTAGAAACAATGTAGGCCAACAACAACAAATTTAAGTAGGCCTATAAAAAATTGAGATGAGAAAGTGTCATGAATTGACAACTCTGACAGACGGCAGCAGGAATATTAGGCTGCTGTCACTTTAAGACCAAATGCACAGATCCAATATACTGTTACACATGACTTATTTCCCATCCCAAAAAGACATAATCAACGGTGTTTAAGCGAATACTCACCAAGCTGGGCAACTTGATATATTTCTGTGTGTATTTAACCGTTTAGGCACAAACCCGAAGCTCAAAGTTCACTTTTATTGTCCGTGTTCCACTCCGTCTCAGAGCGCGCGCACAGAAAGCCACTTTGGGAACGGTAGGCCTATCTCTCTTTCGTGGCTTAATGTAGTTTTAATAACTCTTTTTATTATAGAGCATGTGCTGCAGTTTAGAAACAGTACGAGCTTAAGTTTGGGCTTTTAGGGACTGCTGTGAAGGAAGGAAATGCACTAAAATAGCACAGCCTTCATGTTGCAATGTCGTTGCAATGTCTCCGCTCTTTGCAAAGACGTTGCAAATTTATTGTCCTTTTTCAGACACCTGGTAGAACTGCCAGAACGGTGAATGTAGTGAAGCAATATTAGCTGCGCATAGAAAAATTGTCTTATGAGTTTTGCATCATCTGACCAGCTCTTCTGATCAGCCTTTTATAGAGACCACCGATCAAACTATATAAAGCTATTATCGGCTAATAACGATCAGCACCCGATCAACCGGCGCTCGAACCGGAAAGAAAGAAAGTCATACAAGACATTTGGAATGATATGAGAGTGATTCATTTTTGGGTGAACTATTCCTTTAAACAAGAGGGGCAGTTTGTCAGAGTGTTCCTATCAGAGTAAAGCCAATTTGTCAATCTTCTCTGTTTACAAGGACAGGTATCAGTGCCAGAAACTCTGTCTGTGCAGGGCGATATTATGCATGCTGAGCACACACACACACAAACACAGGCTCTTCCTGTGGCATCAGCAGCAATCGTTGTAGTTTCGACCAGTCAGCTCCCCTCTTCTCCACCTGGGAAGAAGGAATGCATCAGCGACAAGAATGACACATTCTCATTTCTGTGTGTGTGTACTAGCAAGGGAGAGGGGAGAAATAATAGGATAAATAGTTAACTCAGGACATCCCCACTCAAAACAAACATCAAACACTCAAAATCCCATCATGCACCATGACGTAAAGCACCAACGCAATGTTCCAAAAGAAATGTTAATTTAGAAGCAGGCTACGGTGTGGCTTAGTTCAGTGAACCAAATCCACAACTTTATCACTGATTTACCTGAAATTCAGTGTGAGGTCAAAATGCCTTGTATACTAAAAAAGAAATGCCTGTTCCAAGTAGATACATTTTATTTTCAGTTTCTAAGAGTGAGCAAACTGCAAAGTCAACTCTGAACTGAGCAACTACCACACAGTGCCTCTCAATAATTGTCTCCAGTGTGTAATTAGTAAGTCCTGAGGGTAGACTCTCAAGAAAATAATTGCATACTTGATTTGGGCTAAAATATAACATGCATGTTAATTGAGGCTTTTACGGCCCTTAAGATATATGCGTTACGCTTGACGTGCACATCTGATTTCTTTTTGGTACACAAACATTGTAGCATGTATATGTGCAGTTTCTGTAGTTTCAAAACCTAGTACTTTCTACATAGGCAACTTCCTTCTAAGGCATCCTAACTGAAATAAATCCTTATAAGTGGCAATATCATGCACACAGGTGACTTAATTCACATTTGATTCCATTAGAGTTTAATGGCATGTTTCTAAGATAGCAAAATAATAGCATAAAAATATACAACAAATATTTGGAAAAAGTCACAAACAATTGCTGTTTGAATATGTGTGATATCGGAACTCACTATGGTTTGAAACACAGCTAACGTATTCATCATTAAACATGGCTGTGCGACTCTATTTTAAAAGGTTCATTTGAGTAAACTGTTTTACCCCCCTCTGCATTCCAGAGATCTGAACACACCCAAACAATGACATTATCTGGAACAAGAACTGTCTTGTAGACAGTGTTTGTGTAAATCTTTGTGTAATACTTTCTAGGTTAATACCCTCAATGGTTGTTTTTCCTGATCAGCCCAACATGACAACAGTGGCTCAAAAAATGGTGTAAGTTTGGGGTGGTACTATCTGTTTGTCTGACCATTTTTGCAGAGGCTACTGGAGCAGAACTTACACACTTCCACATAAAGTACATTAGTGTGACTGCACTCTTCCATAAAAATGCAGTACTAACAGGGCATGATGATTATTTGCTCATGGCAGTGTCTGTGTTTTGATTTGTGGAGACTCTAATTTGATCGCCTTTATAGATCATTGACGATGAACCCAGGGCATTGCTGTGCATCTCGCTTCCAAAGTCATGGCCTTGTGCTCGCTCATGATGTCTCCTTGCGTAACTCTTAATCAGCAGAGGCGTATTGGGTAATAATCTCCATGCCGCTGATTAATTCCTTCTTGGGGCTGTCCGAAATTAACAATCGCGACTGAAGCGCCGGCTGCTTCCTGAGACATCCCGGTCTCTCTCTGCCTGTCATCAGCCAAATAGAGCTGGAAAATAGTGCAAATGGTAATCTCTGGATTATGGTGTTAATCCCGGTTTGGAAGACAATAGGGTGAGAGGTTCTGTTTGTGCCCTGAAATGAGGCTGGCTGACTGTCCTGCAGGTGATTTGGAGCAAGCCCAGCTTGCATTTGCTCAGTCTGATTTTGTACGGTTCAGGTTTTTAAAGGTACAGTAGCATGTTTGATAATCAAAGTTATAAATAAAACAAAGACTTTTGAAGTACGTTTTACAAGAAAATACTATTTTAGTTTTTCTGCTTCAAAATTTTACATTTAATTCAATGTTACTTGCCGTTTCTTTGTAATTTTTTGTGAAATTAACTAGCAATTT

Function

symbol description
ppm1e Predicted to enable kinase activity; metal ion binding activity; and protein serine/threonine phosphatase activity. Acts upstream of or within dephosphorylation. Located in nucleus. Is expressed in central nervous system. Orthologous to human PPM1E (protein phosphatase, Mg2+/Mn2+ dependent 1E).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17501 PPM1E, POPX1; protein phosphatase 1E

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15817532_15846675.mRNA False 4172 mRNA 0.48 13 15815776 15846892
TU491329 True 3369 lncRNA 0.39 2 15814649 15818064

Neighbor

gene id symbol gene type direction distance location
CI01000304_15785399_15786785 RAD51C coding upstream 28748 15785399 ~ 15787028 (+)
CI01000304_15779082_15779951 ZBTB21 coding upstream 35671 15779082 ~ 15780105 (+)
CI01000304_15776859_15777750 ZBTB21 coding upstream 38008 15776859 ~ 15777768 (+)
CI01000304_15723867_15741978 NA coding upstream 72913 15723867 ~ 15742863 (+)
CI01000304_15500233_15509862 WNT11, WNT11.L, WNT11R coding upstream 305060 15500233 ~ 15510716 (+)
CI01000304_15896045_15897082 NA coding downstream 49153 15896045 ~ 15897843 (+)
CI01000304_15964692_15966904 NA coding downstream 117024 15963916 ~ 15967493 (+)
CI01000304_16040037_16043960 NA coding downstream 193145 16040037 ~ 16043960 (+)
CI01000304_16109760_16122597 NA coding downstream 260486 16107378 ~ 16122874 (+)
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding downstream 284983 16131875 ~ 16137348 (+)
G427917 NA non-coding upstream 1353 15813103 ~ 15814423 (+)
G427915 NA non-coding upstream 3743 15809203 ~ 15812033 (+)
G427906 NA non-coding upstream 74672 15740258 ~ 15741104 (+)
G427844 NA non-coding upstream 100655 15714842 ~ 15715121 (+)
G427843 NA non-coding upstream 101440 15713909 ~ 15714336 (+)
G427889 NA non-coding downstream 19274 15866166 ~ 15931957 (+)
G427872 NA non-coding downstream 36178 15883070 ~ 15945412 (+)
G427902 NA non-coding downstream 75287 15922179 ~ 15938102 (+)
G427961 NA non-coding downstream 139683 15986575 ~ 15987610 (+)
G427894 NA non-coding downstream 147604 15994496 ~ 15996274 (+)
G426828 NA other upstream 865184 14948890 ~ 14950592 (+)
G426312 NA other upstream 1484890 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2236929 13578049 ~ 13595097 (+)
G425718 NA other upstream 3376690 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 5260072 10555216 ~ 10572164 (+)
G427860 NA other downstream 38562 15885454 ~ 15889591 (+)
G428017 NA other downstream 236338 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 657970 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 909054 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1163838 17009769 ~ 17023882 (+)
G427904 NA non-coding downstream 22847 15840911 ~ 15851136 (+)

Expression


Co-expression Network