CI01000304_15986032_15996763 (CUX1)


Basic Information

Item Value
gene id CI01000304_15986032_15996763
gene name CUX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15985763 ~ 15996763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15986032_15996763.mRNA
CTTTCGGTTATGGCGGGTGCGACTGGTCTGAGGTCGATGACTCCGCTTGTGTACAAAAAAATTGGCAACCTCATCATAGAGTGGTGCCAACTAAAAGAACTGGATGCCACCGCCACAGCCCTAGCCAACAGACAGGATGAAAGCGAGCAGTCCAGGAAAAAACTCATCGACCAAAGCCGCGAGTTCAAGAAGAATACTCCAGAGATATTGCACTGGGTCATTAGAGCCGACAGGAATGGGACAAGGAATGGGAATAGGAGCCGGAATGGGAACCCTCCCTCTGGAGTTCTGGGGGTTCGTCTGTCCCTGAGCTGCCTGGAGAAGAGTAATCTGTCTTCTCGAGGCGGCCTAGCCGACAACAGATTGGTCACGTTAGCCGAGCCTTTTGCAACCCCCAGCGATCCTTTCAAAACCCTGCAATCTACGGTCCTGCGCGTCTGCAAGCACCCGATAACCCACACACTCATCTTCATCTCCTTGGGTGGGCAGTGTACCGGCCTTGGGAGTGTGATCAGATTTCATGCTGTGCTCCATCATTCCCGAGCAAACGGCTGCGCTGTCAGACGCACTCGGATGCACGCTGAAACACGCACACTTAAACGCATATGCTCTACACACTCGTAAAGACGCTCTTCGTGTGTATAAGCGCACAGACAGGCATGCACACATGCACAGACGCCATTAACCCTAGATCCACTTACCGCTTTTCAACACTAGGCTTGCCTGTCCTGTGCTTTTCAGCGCCGTTGAACCTCCGGAAGCCCGTCCTCTGAAGGGCCCCAATCTCAATCACCTGGTCCCCAGTGTTAGATGTCCTAACAGAGACCTACTTTTACTGATTAATGTACCTCGGAGGTCTTTGTCTGACTTGGGTTACCGATTCTTAAAGTAAA

Function

symbol description
cux1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in positive regulation of dendrite morphogenesis and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within animal organ development and negative regulation of transcription by RNA polymerase II. Located in Golgi apparatus and nucleoplasm.

GO:

id name namespace
GO:0050775 positive regulation of dendrite morphogenesis biological_process

KEGG:

id description
K09313 CUTL; homeobox protein cut-like

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15986032_15996763.mRNA True 893 mRNA 0.52 4 15985763 15996763

Neighbor

gene id symbol gene type direction distance location
CI01000304_15903075_15957836 CUX1A coding downstream 27927 15903075 ~ 15957836 (-)
CI01000304_15891065_15894363 KCTD7 coding downstream 91400 15890803 ~ 15894363 (-)
CI01000304_15882316_15888812 RABGEF1 coding downstream 96951 15881682 ~ 15888812 (-)
CI01000304_15859896_15879052 TRIM37 coding downstream 106387 15859117 ~ 15879376 (-)
CI01000304_15794739_15795184 NA coding downstream 189546 15794480 ~ 15796217 (-)
CI01000304_16032454_16034363 NA coding upstream 35229 16031992 ~ 16034452 (-)
CI01000304_16044458_16066649 NA coding upstream 47695 16044458 ~ 16066649 (-)
CI01000304_16067926_16072192 BCL7BA coding upstream 71124 16067887 ~ 16072192 (-)
CI01000304_16073177_16076377 NA coding upstream 76330 16073093 ~ 16076440 (-)
CI01000304_16077939_16106746 PRDM15 coding upstream 80729 16077492 ~ 16106983 (-)
G428411 NA non-coding downstream 179005 15800929 ~ 15806758 (-)
CI01000304_15755554_15770449 NA non-coding downstream 230576 15754452 ~ 15770768 (-)
G428451 NA non-coding downstream 234220 15751343 ~ 15751543 (-)
G428450 NA non-coding downstream 234866 15749584 ~ 15750897 (-)
G428432 NA non-coding downstream 411730 15573732 ~ 15574033 (-)
G428405 NA non-coding upstream 42715 16039478 ~ 16042713 (-)
G428517 NA non-coding upstream 125435 16122198 ~ 16122496 (-)
G428519 NA non-coding upstream 132951 16129714 ~ 16130055 (-)
G428500 NA non-coding upstream 135876 16132639 ~ 16137401 (-)
G428521 NA non-coding upstream 149553 16146316 ~ 16153240 (-)
G427376 NA other downstream 724358 15258964 ~ 15261405 (-)
G427423 NA other downstream 1623871 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1698159 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1716192 14265476 ~ 14269571 (-)
G427309 NA other downstream 1777464 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 782601 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 857802 16854565 ~ 16860911 (-)
G429331 NA other upstream 1927100 17923863 ~ 17924684 (-)
G429499 NA other upstream 2240956 18237719 ~ 18238319 (-)
G429673 NA other upstream 2589679 18586442 ~ 18591856 (-)

Expression


Co-expression Network