CI01000304_16073177_16076377


Basic Information

Item Value
gene id CI01000304_16073177_16076377
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16073093 ~ 16076440 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16073177_16076377.mRNA
AGCCAGTCTCTTGAGTCTGCTTGCTTGTGTCAGGAGTGATAACGTTGCACAAATCTAGCCAAGATGGAGTTTGCAGCGATCTTTGCACTATCTGTACTGATAGGTGCGCTGGTTGTGTTAGTGGCCGTGGCTGTTGGTAGACAGAAAGGTGAATTATCTGAGCAGAACGAACAGAATAATGACACCGATGCACCGGTGGAGGAAAATGAAACGAAAGCTCCTTCCAAAAAGCAGAAACAGCAGCAACAGCGCCCCCGTAAGGAGAGACCGCAGCAGCACACATTTTCACACCAGCTACTGGCTTCCTCTCTGAAGAGTCACAGTGGCAATGTGACCTGCCTGGATTTTAGTAGCAATGCCAAATACCTTGCATCCTGCTCAGATGACCGTACTATCAGGATCTGGAGCACTAAAGACTTCCTGGACCGAGATCACAAGTCCTTGCGGGCCAACATTGAGTTTGACCACGCCACATTCGTCCGCTTCAGCCCAGACTGTCGAGCGTTTATCACTTGGCTGGCTAATGGAGAGACCATTCGAATCTATAAGATGATTAAAAAGGATGATGGGACATTCAATTTCAAAGCTGCTCCGGGGGATTTCCCTCAGAAACACAAGGGAATCATTATCAACATCGGAATCGCAGAGACAGGCAAATTTATAATGTCTGCCTCTGTTGACACCACTATTGTCATCTGGGATCTGAAAGGAGAGGTTTTAGCTACCATCAACACTAATCAGATGACCAGCTCGCATGCTGCTGTGTCACCGTGTGGACGAATGGTGACTGTGTCCAAAGATGGCACATGGAAGCTGTGGGACACTGATGTGGAGTATAAGAAAAAGCAGGACCCATATTTGCTCCGGACCGTGCCATGTCAGGTGTCGGAGGGGAGCCGCATTGCCTTGTCTCCCGACGGTCGTGTAGTAGCCATAGCAAACGGTTGTGATATAGCCTTGTACAGTGCTACCACTGGTGAACTAGAGGAGGAGTTCCACGGTGTTCACAGCGCAAAAATTACCGACCTTAAGTTTGACATCAACAGCCGTTTCCTAGTTAGTACTGGGGACCGTGCCATTCGCGTCTTTCACAATGTAACCGGGTACCGCGCTGCCATCCAGGACATGCAGACAATGCTGAAGAAAACTACAAATGATGGAGTGAGACAGAGACTTGAGCAGCAGATATCAGATGCTCAGAGTGCTCTGGACACAGTGTTGAACGCATCAAAGAAGTAAAGGCTGATTTGTTTTCACTGGGAAGCCAGGCTGTTTTTCGTTTCAGAAATAATTGGCCTTAGCATGCTGATTTTATTGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16073177_16076377.mRNA True 1323 mRNA 0.48 6 16073093 16076440

Neighbor

gene id symbol gene type direction distance location
CI01000304_16067926_16072192 BCL7BA coding downstream 901 16067887 ~ 16072192 (-)
CI01000304_16044458_16066649 NA coding downstream 6444 16044458 ~ 16066649 (-)
CI01000304_16032454_16034363 NA coding downstream 38641 16031992 ~ 16034452 (-)
CI01000304_15986032_15996763 CUX1 coding downstream 76330 15985763 ~ 15996763 (-)
CI01000304_15903075_15957836 CUX1A coding downstream 115257 15903075 ~ 15957836 (-)
CI01000304_16077939_16106746 PRDM15 coding upstream 1052 16077492 ~ 16106983 (-)
CI01000304_16123390_16127834 SKA2 coding upstream 46722 16123162 ~ 16128334 (-)
CI01000304_16202982_16207060 NA coding upstream 126380 16202820 ~ 16207117 (-)
CI01000304_16221131_16225319 NA coding upstream 144294 16220734 ~ 16225319 (-)
CI01000304_16232120_16237285 EVA1C coding upstream 155109 16231549 ~ 16237285 (-)
G428405 NA non-coding downstream 30380 16039478 ~ 16042713 (-)
G428411 NA non-coding downstream 266335 15800929 ~ 15806758 (-)
CI01000304_15755554_15770449 NA non-coding downstream 317906 15754452 ~ 15770768 (-)
G428451 NA non-coding downstream 321550 15751343 ~ 15751543 (-)
G428450 NA non-coding downstream 322196 15749584 ~ 15750897 (-)
G428517 NA non-coding upstream 45758 16122198 ~ 16122496 (-)
G428519 NA non-coding upstream 53274 16129714 ~ 16130055 (-)
G428500 NA non-coding upstream 56199 16132639 ~ 16137401 (-)
G428521 NA non-coding upstream 69876 16146316 ~ 16153240 (-)
G428533 NA non-coding upstream 121377 16197817 ~ 16199521 (-)
G427376 NA other downstream 811688 15258964 ~ 15261405 (-)
G427423 NA other downstream 1711201 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1785489 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1803522 14265476 ~ 14269571 (-)
G427309 NA other downstream 1864794 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 702924 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 778125 16854565 ~ 16860911 (-)
G429331 NA other upstream 1847423 17923863 ~ 17924684 (-)
G429499 NA other upstream 2161279 18237719 ~ 18238319 (-)
G429673 NA other upstream 2510002 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002879 tbl2 coding NC_007121.7 CM002894.2 33253952 ~ 33265566 (-)