CI01000304_16077939_16106746 (PRDM15)


Basic Information

Item Value
gene id CI01000304_16077939_16106746
gene name PRDM15
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16077492 ~ 16106983 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16077939_16106746.mRNA
AGGAGATTTATCTGTCGCTGTCGTGCTGGTTGAAGTGAGATTTACGTGCCTCAATCCACCTTTCGCGTGTTTTTCACCCACCATCCCTTCATGAACTTTCATTTTTGCTGCTTGTGAAGGTGTTTCATTAGTCAGTACTAGGAAGGAAAGTGTCGTTATTGTGTTGAGATGCGGAAGGGTGAGGAGCAGAGCTGAGGATAAACATGTTAAGGGTTTAAAGTGAATGGCTCGGTGATCATGTCGTCTATGGAGGGTGTTTTCTCCTGGGTGGGAGACTGGCAGTGGCTCTGCATGGTCACTCTCTTTCTGGCCTCGGTTGTCACTTTGATTATATACTTGGTGCTGTATTTTTCCAACGAACCTCCTGCTGGGAAAACACCTCTCGGTCATGTGGATTCAGAGGAAGCTGATGGGATTTTATGTTGGGTGCTGTCTCTGAAAAACTGGAAGAGTCAGTGGAGACAAGCCTGGTTTAGGGGCCTCAATGAAGAAGCTCGTAGATCACAGAGTGGGATTCAGCTGACCTTTGAAGAAGATGGTGTCCAGTCATCAGAACTGACCTTGGACCAGATTTCAAGCTTCACAAAAACACCCGGTCAAAAAAATGTCTTGTGTCAGGTGGTTGGAAACAAGCTGCAGTTTTCTCTCAGTGCTTTACCGAGCTCAACATCTTCAGAAACCCCCCTGAGATACAGTGTGAAAATATCTCCACTTCGTCTGCAGCCTCTTTCTGGAGGAATCCAAATGGCAGTTGCATATTTTCTGGCTGTTTCCCCTGCTGGTCAAGGCTGGTTACTGGAAAGCTCCCAGCGCTTGTTAGAATGGCTTTGTAGGCTGAATAACAGTATATTTGGGGCTTTTGTTTCTGTTCTAGAGCTGGCCCTACAGATGAAAGAGGTGAATGGGGAGGTGGAGATTTCCTGGAGGGTGCTTCACCTGGACTCTGTAGATTTGCAGCTGACGCCAAGTTTTGCGCAGGGAGATTATGAGAGTCTAAGTGAAGCAGCTGTGAGCGACAGGCTCAGACAGGTCTTGAATGGAGCTCAAGCATTTGTAACTCTAAGCAGCCGACCTGCAGAGTCTGCAGAAGTCCAGGAAGTAAGGAACAAGACCTTGCAGGTGACCTCACCCCCGAAGCCCCCACGAGCTCATGAATGGAAACTATTAGTGAAGAACATCCGGGTCACATGCAAACAGGAGGATGGTGCTGCAGGCGGCATGAATCCCCAGTGTATCCTCCAGTTGGATGATCCTCCTCAGAAGGTCGCCAGTTCGGTCTTGACTAACACATCCACTCCGGCCTGGGACCAGCCCTTCATATTTGAGCTTAGCGGTCGGTCAAAGGAGCTGAACATCCAGGTCGTGGATAACGGCAAACCTCGGGAGAGTGGTTTGTTAGGGCAGGTATCTGTGCCTTTTGATCTAGTGAAGAAACACCCCAAAGGTCAACAGACCTTTTCACTTATGACCAAAGATCAAGTGACCGGATCATTAACTACTGAGTTCACCTATCTGGAGCCCAGCGAGGTGCGGAGCTGGCAGACGCCCATGCCGGCCCCTACTAAGAGAGTGGAGATGGACCGCACTGTGATGCCCTGTGGCACTGTTGTCACCACTGTCACTGCTGTGAGGAGCAAACCAGGACGACCTTTGCCACCGGAATCCAAATCGCCCTCTAAAAATAAGCTGGCGGAGAGAAGGGTGTCAGAGCAGGCGTCGATACTCGGAGCCAAAGTTAGCAAAGCCCTGTCATCATCGGATACAGAGTTATTGATGCTAAATGGGACCGACCCTGTAGCCGAGGCTGCCATCAGACAGCTCCATGAGTCGGCAAAACAGAAGCTAAAATCTCCCGTCAAAAAGAGCACCATCATCATCTCAGGAGTAACCAAGGCCCCTCTAACACAGGATGAGGAGATGACTTTGATGGCAGGATATGCAGCTGCAATGGACGCTTCTATGTCCGGAGTATCTGAGGGCACCAGCAGTGAAGTAGCAGCATTACCCTCGGAAACAGTGGCAGAACCCAACTTTCTCCAACCCGTAGAGTCCCTGGTGGGTGCGAATGGCACAGATCATGTGGAGGACTGGGAGAGCCAGGCCGGAGAGGACCCAGATGCGGATAAGTCATCTCTGTCCCTCTGTCCCTCTGAAACGGGTTCTAAAAAAGGAAAAGGCAGCTTCCTGCACAAGAGTGCCAAGCTATTCTTCAGACGGCGACATCAGCGAAAGGAGCCAGGGATGAGCCAGTCACATAATGACCTGCAGTACTTGGAGCATCCCGAAGCGGCCATGATGGGTGACAGAGAAAAGAGGACAGCCACCTTCAGGCGCATTATCAACCGCAAGCTTCTGCCCAAGAGCAAGAGCAAAGCCAACGGCACATCATTCCACACGTTTGCCACACGTTTTTTTAAAAAGTTGATTCACAAGGTTAAACAGGTATTGAAATGGAAGGAGGCAAATGAAGATTTTATTTTTGTCATGCTTGCTAGGCCGTCCAGAGCTCTAATATTGATCGAAAATCTCACGGTGGCCTGTTTGTGGAAAAACTTCACTTCCCATAATGCCTTTCGCGGGTCTTATTTCCGGTCCTGCGCGGTTTCTGGAGCGGATTGGAACCCGGAGTCAGGATTCACTAAATGTGTAGACGTTTGGAAAACAGGGTGTGAGGACTGCAGGCAGTACCATGACTCTGAGTGTCCTGAGCTGGGGCCCATCGTCACGGTGAAGGACTCATTTGTTCTAAGTCGGGCACGGTCGTCTTTACCAGACAGCTTGGAGATCAGGTCAGCTGAGGAGGGGAATGAAGGCGTGTTTGTGCTTCGACGACTGGTTAAGAGGACTCGATTTGGTCCTTTTGAGGCCAAGAGGGTTCCAAGCCTTCAAATTGAGGGTGCATTTCCTTTAAAGATATTCCAGAAGGATGGCTCAGTAGTGTGTTTTGACACATCCAATGAAGACGACTGTAACTGGATGATGTTGGTTCGGCCTGCCACAGACCACAAACACCAAAATCTGACGGCCTACCAGCAAGATGATGATGTTTACTTTAATACATCACAGGATGTTCTGCCCGGAACAGAGTTGAGAGTCTGGTATGGAGCTTTTTATGCCAAAAAAATGGATCGGCCTGTTCTTAGGCCACCTTTACTCCCACCTCCACCAGAAATGGTGTCCAGCAAACCTGGAGTCCCTCTGGCGAAGGGGCCACCAACACAAACCCTTCCTGTCCCAGACCAGCTTCTCTGCCAAACCCCAGCACCTGCCGCAGACCCACCTATCCAGCAGGTTGCAGAGGTGATACCCCAAAACAACACGGCCAATGTTGCCCTCACCCCACCTGAGCCAACCAGAAAACAAGGCAGACCACGACGGACAAAAGCACAGAAAACTGCGCAGAGTGGATCAACTGATTCCGGTCAAGAATCCACTGTTCCTGCATCTGGTGAGCAGCCTCTCAGTACTGTGGCTCCTGATGTTCCTCTGTCTGTACTGGATGTCCAAGAGGTCATGGTGGCTGAAGACGGCCCGCCACTCAAAACATCTCGGGTGACACGCTCCCCCATCTCCTCTGGGAAACCTGGTATAAGGAAGCGATCTCTGCGGCAGGGTGGTGATCATAAAAGAGTTTACCAGTGCTGTCTCTGCTGTAAGGTGTTTCAGAACAGCAGCAACCTCAACCGACACATCCGTTCCCACGGTGATAAGTGTTTTAAGTGTGATGAGTGTGACAAGATGTTTAGTCGAAAAGAGAGTCTTAAACAGCATATATCTTACAAACACAGCAAGAATGAGCCTGATATAGAGTATAGGTACAAATGTTCAACCTGTGAGAAATCCTTTCGAGTGGAAAATGCCTTAAGATTTCATAACTGCAGGACAGATGACAAAACGTTCCAGTGTGAGATATGTTCAAGGTTTTTCTCCACTAACAGTAATTTGTCCAAGCACAAGAAGAAACACGGAGAGAAACTGTACGCGTGTGAGATCTGCAATAAGATGTTCTACCGCAAAGATGTCATGCAGGACCACCAGAGGCGGCATGTTGTTGGCCCGAAAAACATGAAACGAGAGGAGCTTGAAGCGAACGGAGAGGAGGGAAGCAAATACAGAAAGGAGCCTTCGGCGTGTCCAATTTGTGGAAAGGTGTTTTCCTGTCGGAGTAACATGAACAAACACTTACTAACCCACGGGGACAAGAAATACACCTGTGAGATCTGTGGCCGCAGGTTCTTCCGTGTGGACGTCCTGAGAGATCACATTCATGTTCACTTTAAGGACATCGCCTTAATGGACGAGCAGGAAAGAGAGGACTTCATTAAGAAGATTGGCATCTCTATGGAGGAGAGTGACGACAGTTCTGATGAGGAAGATGAGAAGAACGATCCTGAACATCACAAATACAGTTGCAAGAAATGTCAGGTGACATTCGCCAAGGGTCGTGACTACTTGAAACACATAATGGACATGCATAAGGAAAAAGGTTACAACTGCACCATGTGCAACCGCCGTTTTGCTCTGAAGGCCACGTACAATGCTCACCTGGTCATTCACCGAGACCACCTGCCCGATCCTGCAGTGCAGAAATACATTCATCCATGTGACATGTGCGGACGGATCTTCAACAGCATCGGCAACCTGGAGAGGCACAAAATCATCCACACAGGAGTAAAAAGCCATTGCTGTGATCAGTGTGGAAAGTCCTTCGCCAGGAAAGACATGCTAAAGGAACATCTGAGAGTCCATGACAACGTCAGAGACTTCCTGTGTGCAGAGTGTGGGAAAGGCATGAAGACAAAACATGCTCTACGGCATCATATGAAGCTGCACAAGGGAATTAAAGAATACGAATGTAAAGAGTGTAACCGCAAATTTGCCCAGAAAGTCAACATGCTGAAGCATTACAAAAGACACACTGGCACAAAGGACTTCATGTGTGAACTGTGCGGGAAGACGTTTAGTGAGAGAAACACAATGGAAACGCACAAGCTTATCCATACAGTTGGAAAGACATTTTCTTGCTCCGTCTGTGACAAGAAGTATGTGACGCAGTATATGCTGCAGAAACACATGCAGTTGACTCATGAGAAGGTGGAGGCTCAGAGCTGCCACCTGTGTGGCACAAAAGTCTCTACACGAGCCTCCATGAACCGCCACATGCGCCGGAAACACCCCGAGATTGTGGCTGTACGATTGGGTGACTTTGATCTTCAAGAACCATCAACAGTCGACGCCTCTACCATTAGTATTGCACAGCCCTCTCTGACTCTGGAGAAAAGCTCTCTTGCTGCGGAAAAAGCCTCCAGGAACTCCAATCCCTCCAAGAAGAGGGCAAAACTCCTGCCTCATGAGCCTGAGCTGTCTGATTCAGACGAGTACGCTGACTTCACCAGCAGAACCACTGAGTTCTCAACCACCGTGGGAGATGAAACCAACTCTGCTGTGCAGAGCATTCAGCAGGTGGTAGTGTTGGCTGACCCCAGCGCCCCTCCAGCCCCCTCCAGCTCGGTCAGTTTAACCAACATCACTGTGACTCCCATCACCACACCCGCTCCTGCCCAGTTCAGCAGCCTGCAGCCTGTCGCCGTCAGCCACCTCGCTCCAAGCGATCGGCCCCTCACCCTGGACAGCTCCATCCTTACCGTGACCTTTGATGCTGTCAGCGGTTCAGCCATGCTGCACAACCGTCCAGCAGATCTCCAGTCAGAGGCGGTGGGATCCACAGGGACCACGGCTCCGCAATCAGTGGCGCATTTCATCAACCTCACTACCTTCGTCAACCCGATCTCCCACCAACTGGAACAGCCCGCTTTAACCTGGAGGCCCGTCACACCGGCCGATGGAGATCATGCGACCACCATAGATGACACCCAGACGGATGTTCAGCCCGCTCAGGCACCACCGGAGCAGCCACAACCACTGCCAGATCAAAGGCATCAGATTCAGCCGCAAGTCACGGGACCTCCTCAACAACAAACCACTGCTGCACCACAGATGTTCAGCTACTGAGAAATGAAGTGTATGATGTAATTTATAGCTAAGGTCCCATTTCGGAAATTGGACCAATATGATGAAAGGTTTTGTTATTAATTGAGCACTTCTCGTTGTTGAAAATACGACTGTGACTATAAGGGCACACGCCTTTTGTTTGAATTTATGAAAAACCAGTAGACAATTTCAACAAATTATTAAGATGCTGAATATTATTTTTTTTATGAATGCATGAAATGTGTCTGGTTATGAATTAAGATAAAAAAGGGACCTTAGTTTTTCAAAATGATAACTAAAATTATATTTGTTGTTTAATGTCATTCTGTAGCACCTGTGGAGTGATGTCAAAAAGAATGAATCTATAGAAATGCAACACATGGATATATTGTATTGTAAGTGCTAACTGGAAATATTTTCTATTTTTTCTTTCCTTTTTTTTAAAAAAAAGGTTGTCCTTCCAATAAA

Function

symbol description
prdm15 Acts upstream of or within primitive erythrocyte differentiation. Is expressed in cranial ganglion; intermediate cell mass of mesoderm; and muscle pioneer. Orthologous to human PRDM15 (PR/SET domain 15).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16077939_16106746.mRNA True 6459 mRNA 0.49 40 16077492 16106983

Neighbor

gene id symbol gene type direction distance location
CI01000304_16073177_16076377 NA coding downstream 1052 16073093 ~ 16076440 (-)
CI01000304_16067926_16072192 BCL7BA coding downstream 5300 16067887 ~ 16072192 (-)
CI01000304_16044458_16066649 NA coding downstream 10843 16044458 ~ 16066649 (-)
CI01000304_16032454_16034363 NA coding downstream 43040 16031992 ~ 16034452 (-)
CI01000304_15986032_15996763 CUX1 coding downstream 80729 15985763 ~ 15996763 (-)
CI01000304_16123390_16127834 SKA2 coding upstream 16179 16123162 ~ 16128334 (-)
CI01000304_16202982_16207060 NA coding upstream 95837 16202820 ~ 16207117 (-)
CI01000304_16221131_16225319 NA coding upstream 113751 16220734 ~ 16225319 (-)
CI01000304_16232120_16237285 EVA1C coding upstream 124566 16231549 ~ 16237285 (-)
CI01000304_16247523_16254506 HUNK coding upstream 139400 16246383 ~ 16254506 (-)
G428405 NA non-coding downstream 34779 16039478 ~ 16042713 (-)
G428411 NA non-coding downstream 270734 15800929 ~ 15806758 (-)
CI01000304_15755554_15770449 NA non-coding downstream 322305 15754452 ~ 15770768 (-)
G428451 NA non-coding downstream 325949 15751343 ~ 15751543 (-)
G428450 NA non-coding downstream 326595 15749584 ~ 15750897 (-)
G428517 NA non-coding upstream 15215 16122198 ~ 16122496 (-)
G428519 NA non-coding upstream 22731 16129714 ~ 16130055 (-)
G428500 NA non-coding upstream 25656 16132639 ~ 16137401 (-)
G428521 NA non-coding upstream 39333 16146316 ~ 16153240 (-)
G428533 NA non-coding upstream 90834 16197817 ~ 16199521 (-)
G427376 NA other downstream 816087 15258964 ~ 15261405 (-)
G427423 NA other downstream 1715600 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1789888 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1807921 14265476 ~ 14269571 (-)
G427309 NA other downstream 1869193 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 672381 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 747582 16854565 ~ 16860911 (-)
G429331 NA other upstream 1816880 17923863 ~ 17924684 (-)
G429499 NA other upstream 2130736 18237719 ~ 18238319 (-)
G429673 NA other upstream 2479459 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002880 PRDM15 coding NC_007121.7 CM002894.2 33269371 ~ 33297864 (-)