CI01000304_16221131_16225319


Basic Information

Item Value
gene id CI01000304_16221131_16225319
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16220734 ~ 16225319 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16221131_16225319.mRNA
GATGGCAGTAGTTTTCTTGTCCAGGATGAACAGCGGTTTAGCAGGGAAGTCCTGCCCCTTTACTTCAAACATTGCAACATGACCAGCTTTGTGCGCCAGCTTAACATGTATGGCTTCCACAAAGTGGTGCATGTGGACGCTGGCTTGCCTAAAGCCGACGGGCAGGTAAATTGTGTTGAGTTTCAGCACGAAGACTTCCAGAGAGCTCAACCTCAACTGTTGGGCCTCATCCGCAGGAAGGTTTCAGTTAGCCGTGGAGTTGAAGAGGGAGGGCAGATCTCTCAGTTACTCGTTCAGGTTAGTCATGTCAGAGGCTGGCAAGACTCCTCAGACCTCAAACTCATGGCTTTGTGCAGGGATAACGAAAGTTTGTGGAGAGAACTGGACTCATTAAGACAGAACTATCAGCAGCAGCACAAAATCCTACGCAAGATTATAAAGTTCATCATCAACATCGTCCAATCAAATGGGATCAAAGGTTGCAAAAGGAGACTTTCTCTCTTCGTAGACCACATTTTCTTTCTTCACACTAACAGCCCCATGATCGACAATTCTGGCGATTTTCACTCTGCACCGAAATACGCCCGCTCCTTCAGTGTGAATCCCACCCTAAGCACTTCCTCCCTCCAAGAGATCCCTTCATTGCAAGAGCTGGATGTGTCACCCGCTGATGTGTACTCAAATGGTATGATCATCTCTGACATCAACCACCTGCTGGATCAAACACCTGAGCCTAGCAAAGAGCCTGTGACAGAAAGCCTTCCTGTAACTCTCCCCACATTCTTATGTCCCGCCTCCCCGACTCTGCCCTCCGTGGAGCTGGCGTTGTCTTTGCTGGATGACCCAGCTGTCCAGGTGTCTGAGGAAATATCTGAGGAAAGCAGAAATGATGTGTCTGATCCACTGGCGCTTATTGACTCCAGTTTAGCAGCGATCCGCTCCTGCTCTCCACCCTCACCAGACCTGGACAATTTCAGCAAGATCCTTAGTACTGGCTGTCAAGTCTCTGCTGTTCAAGACTCCGTCACAGAAACCAAGATCAAACAGAGAAGCCAGAATCAAGCTGAAACGACACCTCACACCGACACAGTTATACAGCAGAGAAGCCTGCAACAAAATGCAGATTCGGAACAGGAGCGCTATGATGGTGGGGACACTGGAGAGTATTCGGATATCTTACAATCCCTGCTGCAGCTGGCACAGGAAGCGTCCAGCCTCTCCTTCAGTAACACTACACTGCCCTTAGAGCTCTCTTTTGTCATTTAAAATTCTAGTGCATGGATTGTTTGATATTGTGATATGATGTTTTATTATCAAAGTTCAGGAGGAACACGTTCAAATTGCCTATCCATTCAGTACTAGAGGAGGCATAAATATATACATGGCCACCTATGTTCCTCGACAGTTTTCTGAATCCCTCCGCCACCCTGACTCCTCACACCCGCCTGGTTACTATCCTAACCAGAGATACGGGGGGAGTACTCTGGGTTCGGGCCAAATTCCGAGCTCGGAGCCCTCTCCTTGGACAGCACACCAAATACGCATACTGATTATTTGTAAGAGTGAACTTGTGAAATGGTAGTTGATAGAGAAAATTGCTGTCTGAAACGGTCGAGAGTTGAGAGTTCTGCTATTTGATTAAGGGTTCAGACATTGCTATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16221131_16225319.mRNA True 1663 mRNA 0.48 11 16220734 16225319

Neighbor

gene id symbol gene type direction distance location
CI01000304_16202982_16207060 NA coding downstream 13617 16202820 ~ 16207117 (-)
CI01000304_16123390_16127834 SKA2 coding downstream 92400 16123162 ~ 16128334 (-)
CI01000304_16077939_16106746 PRDM15 coding downstream 113751 16077492 ~ 16106983 (-)
CI01000304_16073177_16076377 NA coding downstream 144294 16073093 ~ 16076440 (-)
CI01000304_16067926_16072192 BCL7BA coding downstream 148542 16067887 ~ 16072192 (-)
CI01000304_16232120_16237285 EVA1C coding upstream 6230 16231549 ~ 16237285 (-)
CI01000304_16247523_16254506 HUNK coding upstream 21064 16246383 ~ 16254506 (-)
CI01000304_16305853_16306849 NA coding upstream 80069 16305388 ~ 16306901 (-)
CI01000304_16402321_16404006 NA coding upstream 176292 16401611 ~ 16404006 (-)
CI01000304_16414561_16417605 RFC3 coding upstream 189183 16414502 ~ 16417605 (-)
G428502 NA non-coding downstream 321 16220029 ~ 16220413 (-)
G428509 NA non-coding downstream 842 16218523 ~ 16219892 (-)
G428506 NA non-coding downstream 4708 16209089 ~ 16216026 (-)
G428533 NA non-coding downstream 21213 16197817 ~ 16199521 (-)
G428521 NA non-coding downstream 67494 16146316 ~ 16153240 (-)
G428547 NA non-coding upstream 54947 16280266 ~ 16280521 (-)
G428638 NA non-coding upstream 362156 16587475 ~ 16594509 (-)
G428681 NA non-coding upstream 378231 16603550 ~ 16609014 (-)
G428707 NA non-coding upstream 586865 16812184 ~ 16812467 (-)
G428710 NA non-coding upstream 653750 16879069 ~ 16879279 (-)
G427376 NA other downstream 959329 15258964 ~ 15261405 (-)
G427423 NA other downstream 1858842 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1933130 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1951163 14265476 ~ 14269571 (-)
G427309 NA other downstream 2012435 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 554045 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 629246 16854565 ~ 16860911 (-)
G429331 NA other upstream 1698544 17923863 ~ 17924684 (-)
G429499 NA other upstream 2012400 18237719 ~ 18238319 (-)
G429673 NA other upstream 2361123 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002887 si:dkey-18a10.3 coding NC_007121.7 CM002894.2 33561567 ~ 33572441 (-)