CI01000304_16315830_16336387 (RXFP2A)


Basic Information

Item Value
gene id CI01000304_16315830_16336387
gene name RXFP2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16315168 ~ 16336928 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16315830_16336387.mRNA
ATATAAAATTGAGATCAGGAGCATGCCATGTTTTCCAAGATTTGACAACATCTGGGACGAAGGCCTAAACATCAGGGGCTTGTAGGGATTCTTGGGGTGTCCTCCCATTGAAAATCAGTTTTCAATTATTTTCAAGATCACGCAAATCACCTCAGGTGTACTGTAGTTCTGTATTAATAAAATAAATTAACAAATAACATGTGGGTATGATGCCGAAGCTCATTTGAGTCTTTTTCTCTGCCTTATTATGAGATTATGGTCCATCCCTGTAAGTAAAGGTACAAGTAAATGCTGCTTGCTTTCTGTCTCATACATGTATAGAGTTATAAGTAATATTACTCAATGTTCTAATACTTTATGGCCTTGTTTGCCTTTAAAAATTCTAAGAGATTATTTTCAAGATCACCCAAATCTCCTCAGATGTACTGTAGTTCTGTATTAATGAAATAAATAAACTAATAACATGTGGGTATGATGCCGATTGCTGAATCTTGTTTGTGTCTCTTTTCTCTTACTTATTATCAGATCATGGTCCATCCCAAGTAAATAGGTAGAGGTACAAGTAAATGCTGCTTGCTTTCTGTCTCACACATGTACGCAATTATTATTAGTGACTTTCACTCAATGTTCTAATACTTTATGGCCTTGTTTGCCTTCAAGAGATGACTGTATTCATTAAGAGCCTGACGAAAGGAAAGTTATGTCTGTGTGATGACAGGTTTCTTCAGAACAACACAATTCAGATGGTCTCAAGCCGTGCCTTCAGTGGACTGTTCACTCTAGAAAAATTGTTTCTCAGCCAAAACCACATATCCTATTTAGGACCAGGTGTATTCAGAGATCTACACAAATTAAACTGGCTAGTCTTAGATCACAATCCACTTAAAAGCATCACCCGTGATACATTCATTGGTCTGAGGTCGCTGACATATCTAGGACACCTGTCGTGTAATAGTCTGGCAGAAAGCTTTGATTGTTTTTTCTCTGAAACTGATTCAGTCACATCTGGAAGTGCTGTAGGGGGTTTATTTAACTTCTACATTAAAGACCTTCAAGGCTCTTGCTGTGACAGTCTGCACATTGAGGCTGCCAGGCTGGGTTTCCTTTTAAGGGACTTCGCTGAGAACCACGTCGAGTTGCTGAATTATTCCACTCTGATGACATGCACCGAGCTTACAGTGCTAACGCTGCATGACAATAAAATCAAGATCCTTCCAGAAAGCACGTTTCATTCTCTTGGATCTTTGGTTGAACTAGATCTGTCTTGCAACAGAATTTTCGATCTTCCTAAAAACACTTTCAAGAGTTTAAAATTTCTGCAGAAACTGAACATATCCCATAATCCTGCACTCCATATTCATGCGAGACACTTCGATCACCTGGTCCATCTTGAGTCTCTAAGTCTGGAAGGCATTGAAATTCCTGATATAACCACCAAGATGTTTCTTCCAATGGGGAACCTGTCCCACATATATTTTAAGGATTTTCAGTACTGTTCCTATGCTCCACATGTTCGGAAATGTAAACCTAACACGGATGGAATTTCATCAGTTGAAGACCTGTTAGCCAGCCTGGTTCTGCGGGTGTCCGTCTGGGTGATGGCATTCATCACTTGCTTTGGGAATCTCTTTGTTATCGGAATGCGCTCCTTCATTAGAGCGGAGAACAACCTGCATGCTGCCTGCGTCAAAGTCCTGTGTTTTGCAGACTGTCTGATGGGAGTCTATCTCTTCTTCCTGGGGATATTCGATGTGAAATTCCGTGGTGAATATAACCGGAACGCTCTTATCTGGATGGACAGTGTGGAATGCCGAACAATTGGCTTTCTTGCCATGCTCTCCTCTGAAGTATCTGTTCTCCTTCTCACCTACTTAACGCTAGAGAAATTCCTAGTAATCGTTTTCCCTTTTAGCCATCTGAGGCCAGGGAAGCTGCAGACAGTGTTGGTTCTGGCCTTCATCTGGATTCTGGGATTCGTCATAGCAGCTGTTCCCCTGCTAAATGAAGACCTGTTTGGGAACTATTATGGGCGAAATGGAGTTTGTTTCCCTCTGCACTCTGATAGGCTGGAGAAACCAACAGCCAAAGGATACTCCACAGGGATATTTCTTGGACTTAATCTGGTGGCGTTCTTGGTGATTGTCGTTTCCTATTCTAGTATGTTCTGTTCCATTTATAAAACCGGCATCAATGCCACAGATGTGCGGAGTCGACTACACAAAGATGTGGCTGTGGCCAACCGCTTTTTCTTTATTGTGTTCTCTGACGCCCTCTGCTGGATACCCATATTTTTGGTCAAAACACTTTCTCTGCTAAAAGTTGAGATTCCAGGGACAATAAACTCCTGGGTGGTGATCTTCATTCTTCCTATCAACAGCGCCCTTAACCCCATCCTCTACACCCTGACCACCAGCTTCTTCAGAGAGCAGGTGGAGCTTCTCCTTTGCCGCTGGCAGCGACACTCCGCGTCAAAGAAAGACCGTAAGAGTCTCACCAGCTCCACCATCTACATGGAGTCCTCTCGAAATGCAGAATACCCAGCAAAAATGTCCTTGCCACAACTGTCTTTGGCAGACATGGATAACCAATATGGGTGAAATCGCCAGTGAGTAAAAGGCATCAAAGTGTAGGCCTATCATAATCGTTATCTGTTCAGAAAGGAGAAAGACGGTCTTTCCTGGAACAATTTAAGTGAAAGGATGGCACTGTTGATTTCTGCTGTTTTTGTTCCAATATGGAGTTCTCTTTTTAGACGCATGACTCTAGCTCTGCTGTTTGCTCCATTAGGAGAAGCATTTTTGAACACTTCAGCTAGAGCTTTGAACCCCTTCAGCGTCCATTACCACCATAAACACCATGTCTGGCGTAGCCCTTGAGCTGGACTTGTTGTTTGTCTCAAAAGATTTTAAAGAAGACTACAAAAACAATGCAGATGACTGTCAGTATTTACAGCAAAGCACATCTTTGAGAGATCAAAGGAACTTCAAAGCATAATTTCTATGAAGGAAAATTTGTACAGTTTTTTTTTATGGAGATGTTTGACTATGTGATGGATTTTGAGATTGAATTTGAGAAGTTATTTGTAATGTACAGCAAAGGGTTTTTATGCTTGCTTTGCCATTTCACAGTAAAGGCTCA

Function

symbol description
rxfp2a Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in activation of adenylate cyclase activity; adenylate cyclase-activating G protein-coupled receptor signaling pathway; and hormone-mediated signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in female organism; male organism; and ovary. Human ortholog(s) of this gene implicated in cryptorchidism. Orthologous to human RXFP2 (relaxin family peptide receptor 2).

NR:

description
leucine-rich repeat-containing G protein-coupled receptor 8.1

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04307 RXFP2, LGR8; relaxin family peptide receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16315830_16336387.mRNA True 3138 mRNA 0.42 14 16315168 16336928

Neighbor

gene id symbol gene type direction distance location
CI01000304_16261912_16276701 B3GLCTB coding upstream 37715 16261912 ~ 16277453 (+)
CI01000304_16255785_16257956 NA coding upstream 57016 16255785 ~ 16258152 (+)
CI01000304_16238051_16240914 MIS18A coding upstream 73874 16238051 ~ 16241294 (+)
CI01000304_16228517_16231072 CUNH21ORF59, CSSA11H21ORF59, CLG07H21ORF59, C19H21ORF59, C10H21ORF59, CSGR11H21ORF59, CLG14H21ORF59, C16H21ORF59 coding upstream 83615 16228517 ~ 16231553 (+)
CI01000304_16146512_16201457 RYR1, RYR1A coding upstream 113063 16146201 ~ 16202105 (+)
CI01000304_16347460_16350144 NA coding downstream 9848 16346776 ~ 16350185 (+)
CI01000304_16358266_16367985 FRY, FRYB coding downstream 21338 16358266 ~ 16368340 (+)
CI01000304_16370076_16401491 FRY, FRYB coding downstream 33042 16369970 ~ 16401614 (+)
CI01000304_16406577_16413911 KL coding downstream 69139 16406067 ~ 16414223 (+)
CI01000304_16433456_16438415 NA coding downstream 95501 16432429 ~ 16438531 (+)
G427866 NA non-coding upstream 94760 16220030 ~ 16220408 (+)
G427868 NA non-coding upstream 95231 16218447 ~ 16219937 (+)
G428027 NA non-coding upstream 185088 16129707 ~ 16130080 (+)
G427864 NA non-coding upstream 217675 16091400 ~ 16097493 (+)
G428020 NA non-coding upstream 225996 16088069 ~ 16089172 (+)
G428069 NA non-coding downstream 85819 16422747 ~ 16422949 (+)
G428099 NA non-coding downstream 138294 16475222 ~ 16555622 (+)
G428116 NA non-coding downstream 312964 16649892 ~ 16654939 (+)
G428188 NA non-coding downstream 394679 16731607 ~ 16731828 (+)
G428197 NA non-coding downstream 442435 16779363 ~ 16780995 (+)
G428017 NA other upstream 231454 16083230 ~ 16083714 (+)
G427860 NA other upstream 425577 15885454 ~ 15889591 (+)
G426828 NA other upstream 1364576 14948890 ~ 14950592 (+)
G426312 NA other upstream 1984282 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2736321 13578049 ~ 13595097 (+)
CI01000304_16505174_16506124 NA other downstream 167934 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 419018 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 673802 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 977910 17315087 ~ 17315600 (+)
G429050 NA other downstream 1345343 17682271 ~ 17684763 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location