CI01000304_16451635_16453520


Basic Information

Item Value
gene id CI01000304_16451635_16453520
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16451377 ~ 16456557 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16451635_16453520.mRNA
AGTTCTGATCTGAGTGCACACTTTCATCTGCACCACCCACTTAATGGTTTTGTGTGTGGATGTTTCAGCCAAAGAATTGGGAGAATAAAAAGCACTGTGCAGCCAACTGAACTTCAGCCAAAAACCTGCTTCAGAGTGATTTTAGAGTGTGTTTCTCAAGTACAGTCTGTGCGTGCGTGCGTGCGTGCATGCGTGTTTGTGTGTGGATGTTTCAGCCAAAGAATCTGGAACAATCTCTGTGCGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCGTGATCTTCGGGCCCTTAGACGGCACTGCATCACATACAGGAATGCTACCGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATTGTCGGTGAACACAATCCACCGTGCCATTCGCCGTTGCCGGCTAAAACTCTATAGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCACAGGCGTTTTCTCTGGGCCAAGGCTCATTTAAAATGGACTGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGACAAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGACGCCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAGCCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCGTGTGGCATGGGCAGCTTACACATCTGGAAAGGCACCATCAATGCTGAAAGGTATATCCAAGTTCTAGAACAACATATGCTCCCATCCAGACGTCGTCTCTTTCAGGGAAGACCTTGCATTTTCCAACATGACAATGCCAGACCNNNNNNNNNNGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCACAGGCGTTTTCTCTGGGCCAAGGCTCATTTAAAATGGACTGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGACAAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGACGCCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAGCCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCGTGTGGCATGGGCAGCTTACACATCTGGAAAGGCACCATCAATGCTGAAAGGTATATCCAAGTTCTAGAACAACATATGCTCCCATCCAGACGTCGTCTCTTTCAGGGAAGACCTTGCATTTTCCAACATGACAATGCCAGACCACATACTGCATCAATTACAACATCATGGCTGCGTAGAAGAAGGATCCGGGTACTGAAATGGCCAGTCTGCAGTCCAGATCTTTCATCCATAGAAAACATTTGGCGCATCATAAAGAGGAAGATGCGACAAAGAAGACCTAAGACAGTTGAGCAACTAGAAGCCTGTATTAGACAAGAATGGGACAACATTCCTATTCCTAAACTTGAGCAACTTGTCTCCTCAGTCCCCACACGTTTGCAGACTGTTATAAAAAGAAGAGGGGATGCCACACAGTGGTAAACATGGCCTTGTCCCAACTTTTTTGAGATGTATTGATGCCATGAAATTTAAAATCAACTTATTTTTCCCTTAAAATGATACATTTTCTCAGTTTAAACATTTGATATGTCATCTATGTTGTATTCTGAATAAAATATTGAAATTTGAAACTTCCACATCATTGCATTCCTTTTTTATTCACAATTTGTACAGTGTCCCAACTTTTTTAGAATCGGGTTTGTATATAATATATATATATATATATATATATAAAAAAAATATATATATATATACACACATACATATACACACACAGACGTTTATGTATAAAATGTTTTTAAATAGTGATAACTGCAATGATTTAACTATATTTAACTTAGCTGTATATATTATTTATATTTATTTAGAATGAAAATCATTCCATAAAATAAGTTTCAAAGTGAAGTGAAACAACTGTTACAGGATAGGATTATATGTGCATTTCTGCTGAAAACAGAAGCTTAAAAGTTAAAATGTAATTTGAAATAGTTGTCTACCATTTATTAACAAAAACAGATCTGATCATTTACAGTTTAAGGTAAAATAATTAGGCTTATCCCAATAATTAATAATGTTGAATGTTTATGATCATGCATTTTATCTTCGGATATTGAAAAAAAAAAATTAGGAGAAGTATCAATATCGGCAACACTGGCCTTGATCATATTTGGTATTGGATCAAAATGAAAATTAGTGGTATTGTCCATCTCTAGAGACCTCTGTAAAATGTTGTGGGCTCGGAAAAGACCTTGTTCTTGTTCAACTCCATACTGAGAAGACGTGGAGCTCGCAGAAAATCAACAGTTACAGACCTGCCCAAACATTTCTACTGAACCATGATATTGAAAATGTTGAAAATTCAAAGAGGAAAATGGCAAAGCACTTCAGGTCAATGATTCAGACGCCACTGGAGACAGCTTCACATTTCTTTTGTATGCAAGCATTTCAGTTTCCACTTTGAATGCTTGAAACATGCATGGACGAGCCTGGAAAGATGTAGTTTCAGCCTCAGACGTCACACCCAAGGACCATTGGCTGAATGTCTGATGCATATGGTACACAAAATGGGATACACTTTGTGAGTTTCGAAGTGGTCATCTAATTGGTTGAATTAACTTGCATTATGCTCTTGAATGAATTGCACGCCGGTCTGTTATTGTGGGGACATCTACTTTATATTTTCACGCCCCTAAATTGGTTGCTTTACATGTCAGTCAGACGTCCTCTTGGGCTGCCCTTGGCCAATGAAAGCTGCAATGGAGTCAGACCATCTCTTGTCAGTCTGAAGGTCTGGCTATGGGAAACTAGGAAAGATGCCGTTGAAGCGTACTGGCATCCTTGAGGGAGAACCTGACCATGACTGCCATCTGGTGGTCATGAAATGCAATTCATTTTGAAAAACCATTCATAATTGATTCAGTTCAGCTGAGGACTTGCTTCAGGCTGCATAACCGCTACAGAATTCAGTCCAGCCAAGACCACCACATAAGGGCTGTGCCAAAATTACCTAAACATGAACTTGATCCATGAAAACAAACCTGTGTCATTACGGGCATTCACTTATGAGCTAAATTCAGTAGGGGTCAACCAGAGTAAATCCCAGGCTTTCGACGTGGAGTCGCGCAGCTGCTCGCTGATTGACCGCCGAAGCTGCAGTTTGCTGGACTTTCGCCTCGTTGTCATTATGAACGGTGACACATATCAGCACCGAGCCCGGGTTTCCTCTGAGAGGACCGTTATCCGCTCGCTCGCTCGCCGGGTCGGTCGGGCTCGCTCTGGTGCCGCAGTTGTCGTCACTCCACCTGATACGCGGCGCTGCGTCACCTTGCAGCAGAGGAACAGCGAAGCGTGTTTATATTTCGCTCCGGCACGAGGCTGAATCGGACGCAGAATCCACTCGGATGGGTCTCATGCTCTCTGAGGTTTTCCCGCGTCTCTAATCAGCACAACATGACAGCGAGAACAGCTGTGTGACGTTTCCAGCACTAATGCAATGCAGAGGCGCATGGTACCCCCACTACAACACACTACAGCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTCTCTCACTCCCTCCTCTCTAGGTGAAATATTGACCCTGGGATCTCTCGTGAAATTGGGTAGATGACAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16451635_16453520.mRNA True 3661 mRNA 0.42 2 16451377 16456557

Neighbor

gene id symbol gene type direction distance location
CI01000304_16414561_16417605 RFC3 coding downstream 33772 16414502 ~ 16417605 (-)
CI01000304_16402321_16404006 NA coding downstream 47371 16401611 ~ 16404006 (-)
CI01000304_16305853_16306849 NA coding downstream 144476 16305388 ~ 16306901 (-)
CI01000304_16247523_16254506 HUNK coding downstream 196871 16246383 ~ 16254506 (-)
CI01000304_16232120_16237285 EVA1C coding downstream 214092 16231549 ~ 16237285 (-)
CI01000304_16651076_16668623 DCLK1, DCLK1A, DCLK2 coding upstream 193309 16649866 ~ 16668915 (-)
CI01000304_16684166_16704849 DCLK1 coding upstream 227503 16684060 ~ 16706094 (-)
CI01000304_16711244_16719831 SPG20A, SPG20 coding upstream 254687 16711244 ~ 16719831 (-)
CI01000304_16722727_16724691 CCNA1 coding upstream 266010 16722567 ~ 16724848 (-)
CI01000304_16746258_16751678 SMAD9.S, SMAD8A, SMAD9, SMAD8C coding upstream 289146 16745703 ~ 16751678 (-)
G428547 NA non-coding downstream 170856 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 230964 16220029 ~ 16220413 (-)
G428509 NA non-coding downstream 231485 16218523 ~ 16219892 (-)
G428506 NA non-coding downstream 235351 16209089 ~ 16216026 (-)
G428533 NA non-coding downstream 251856 16197817 ~ 16199521 (-)
G428638 NA non-coding upstream 130918 16587475 ~ 16594509 (-)
G428681 NA non-coding upstream 146993 16603550 ~ 16609014 (-)
G428707 NA non-coding upstream 355627 16812184 ~ 16812467 (-)
G428710 NA non-coding upstream 422512 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 429897 16886454 ~ 16886952 (-)
G427376 NA other downstream 1189972 15258964 ~ 15261405 (-)
G427423 NA other downstream 2089485 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2163773 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2181806 14265476 ~ 14269571 (-)
G427309 NA other downstream 2243078 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 322807 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 398008 16854565 ~ 16860911 (-)
G429331 NA other upstream 1467306 17923863 ~ 17924684 (-)
G429499 NA other upstream 1781162 18237719 ~ 18238319 (-)
G429673 NA other upstream 2129885 18586442 ~ 18591856 (-)

Expression


Co-expression Network