CI01000304_16684166_16704849 (DCLK1)


Basic Information

Item Value
gene id CI01000304_16684166_16704849
gene name DCLK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16684060 ~ 16706094 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16684166_16704849.mRNA
GGGGTGTGTGTGCGCGCGCGCCTGTGTGGGGAGGGATGGCTGTGGCAGGTCTGCGGTGCGGGGCTGAATCTCAATGAGAAAGCGGCCAATGTAAATCACAGCAAGACACGGAGGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCAGCAGCTGCCGACCGACCAGCCAGCCTCCTCTGCGGGACAACAAAGGAGGTGCCGGGCTCACATCACGACTCCTGTCAGCACAACTCAGCATCTGAATCGTGACCACTGAGAAGAAATCTTGAATATTACCTACATATTCACCTTTAGGCAAGTAGAAAGGTTTATTTATTGTTTGTAAGTAAAAATAAAACAGACCGAAAGCTCGCAAATATGTTGACCTGCCTGTTAGAATGTTGTTTTGGTCATTCTAATTCATTTTAATAGTTCGGATTATCAGTTATGTCATTGTTAAATGGTCAGTGACGTGATGTTCATTTTTGTCTGGATCCAAGTTATTCGAAAATAGGCTATAGCCTATTAAGAAATTCAACTCAAACAAAAATGACTTGAACGTTTTCGATTTCAGAACTTAAGTAATTTTCATATGTTTGTGCGCCGTAGTCAAAGCGTCTCTGTGATGTCTCTTTAAAAAAAATGTAGTATAGCATAATCTTTTCTCTTTTTTATACTTCTTTAAAAATATTATTAATAGTTGTGTCAATGTCAAAAAGTTTTTTATGCCTGTATGTTTTTAACATTTTTATTCACGTTTTATTTTGTGTGTGTGTGTGTACATTTAGCCTACATGTTTTTCACTTGACAGTAGCTCTTTAAGAGTAAAAATAGTAAAAAAAAAAAAAATGATATAATAATAAAAAATAAAAAAAGTATGAAAGCTATATGAATACAAAGATCTCATTCTAAGAACTTGGCGTGTTTTGAACTCGATCAAGGGTCAAGGGTTTTTAACATCCTTATTGGTCATTGATCCTGAAATCAAGAAACAGTTATAGTCAATGTATAGCCTACGCAATAATAGACTTTTGGTACAGGTTTTCAAATATCACACGTTAGTAGGCCTATTTGCCATGTCAAAGTAAGACTGTCAACAACAAGAGGATGACAGGCGCAGGATTTAATGAACTCTAAGAAGCTGTCTATTTTCAGACGAGACATCAACTGACATCCATGTCACAGGGTTAGTTTGATAACTTCCTTTTTCCACATTTAATTTTCACAATTTAGCCCTAATTTGACTGGACGACATGGAGGAACATTTTGACGAGAGGGACAAAGTGCAACGCCATAGCCGAAGCGCAGGACGGGCGAACGGGCTGCTCAGCCCCACTCACAGCGCCCACTGCAGCCTGTACCGGACGCGCACCCTCAAAACTCTGAGCTCGGAGAAGAAGGCGAAGAAAGTGCGCTTTTACCGCAATGGTGACAGGTACTTCAACGGCATAGTGTATGCCATCTCGTCGGACCGAATTAGAACCTTTGACGCTTTGCTGGCCGACCTGACCCGAACCCTCTCTGACAACGTCAACCTGCCCCAAGGGGTCCGAATCATCTACGCAATCGATGGTTCCAAAAAAATCACCAGTATAGATCAGCTGGTGGAAGGTGAGAGTTATGTGTGTGGCTCCACCGAAGCCTTTAAAAAACTTGACTACTCCAACAACGTCAACCCTAACTGGTCTGTGAACGTGAGGGCCTTGGGTTCCAGCAAGTGCCCAACATCTCTAGCAAGCTCGAAATCAGGACCGCAGTCCAAAGAGGGCAAAGACTTCATCAGACCTAAACTGGTCACTGTCATCCGCAGTGGGGTGAAGCCTCGGAAGGCAGTTCGCATCCTGCTCAACAAGAAGACGGCCCACTCCTTTGAGCAAGTTCTCACTGACATTACAGATGCTATAAAGCTCGATTCTGGTGTTGTCAAGAGGATCTACACCCTTGAGGGAAAACAGGTCATGTGCCTTCAAGATTTTTTCGGGGAGGAGGACATCTTCATCGCATGCGGCCCGGAGAAGTTCCGTTACCAGGATGACTTCCTGTTGGACGAGAGCGGAAATGAGAATCTATATGTGGCTCTGTCTGGTTTCCTTTCGTTAATGGTGTGGAGAGACAAAGGCTGTTGCCGGTTTGACTCCTCTGTGCTGATGTGAGCTCAGTAAAGAACAGGCGCCCCAGTTTTCTGAAGTGTATTCGGAAGAGCTCTCTCTATTATTGTTGGATGTTTCGCCCCATAATTTCCTCATTGGCTGCAAAAAA

Function

symbol description
dclk1 Predicted to enable protein kinase activity. Involved in response to virus. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0048675 axon extension biological_process

KEGG:

id description
K08805 DCLK1_2; doublecortin-like kinase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16684166_16704849.mRNA True 2251 mRNA 0.43 4 16684060 16706094

Neighbor

gene id symbol gene type direction distance location
CI01000304_16651076_16668623 DCLK1, DCLK1A, DCLK2 coding downstream 15145 16649866 ~ 16668915 (-)
CI01000304_16451635_16453520 NA coding downstream 227503 16451377 ~ 16456557 (-)
CI01000304_16414561_16417605 RFC3 coding downstream 266455 16414502 ~ 16417605 (-)
CI01000304_16402321_16404006 NA coding downstream 280054 16401611 ~ 16404006 (-)
CI01000304_16305853_16306849 NA coding downstream 377159 16305388 ~ 16306901 (-)
CI01000304_16711244_16719831 SPG20A, SPG20 coding upstream 5150 16711244 ~ 16719831 (-)
CI01000304_16722727_16724691 CCNA1 coding upstream 16473 16722567 ~ 16724848 (-)
CI01000304_16746258_16751678 SMAD9.S, SMAD8A, SMAD9, SMAD8C coding upstream 39609 16745703 ~ 16751678 (-)
CI01000304_16754929_16761111 ALG5 coding upstream 48630 16754724 ~ 16761111 (-)
CI01000304_16765458_16765853 NA coding upstream 59045 16765139 ~ 16765853 (-)
G428681 NA non-coding downstream 75046 16603550 ~ 16609014 (-)
G428638 NA non-coding downstream 89551 16587475 ~ 16594509 (-)
G428547 NA non-coding downstream 403539 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 463647 16220029 ~ 16220413 (-)
G428509 NA non-coding downstream 464168 16218523 ~ 16219892 (-)
G428707 NA non-coding upstream 106090 16812184 ~ 16812467 (-)
G428710 NA non-coding upstream 172975 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 180360 16886454 ~ 16886952 (-)
G428713 NA non-coding upstream 208715 16914809 ~ 16916803 (-)
G428729 NA non-coding upstream 245107 16951201 ~ 16955072 (-)
G427376 NA other downstream 1422655 15258964 ~ 15261405 (-)
G427423 NA other downstream 2322168 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2396456 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2414489 14265476 ~ 14269571 (-)
G427309 NA other downstream 2475761 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 73270 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 148471 16854565 ~ 16860911 (-)
G429331 NA other upstream 1217769 17923863 ~ 17924684 (-)
G429499 NA other upstream 1531625 18237719 ~ 18238319 (-)
G429673 NA other upstream 1880348 18586442 ~ 18591856 (-)

Expression


Co-expression Network