CI01000304_16711244_16719831 (SPG20A, SPG20)


Basic Information

Item Value
gene id CI01000304_16711244_16719831
gene name SPG20A, SPG20
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16711244 ~ 16719831 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16711244_16719831.mRNA
ATGGAGTCATCAGATCCGCCTGAAATTCGTACCATTCGTGAGAACTATCAGAAAGCTCTGGAGTGTCTGAACACAGGGCTTCAGTATGATGAGGCGGGGAATAAGGACCAAGCTCTTCTTCTGTACAGACTGGGCAGGCGGCATCTTCTCAGAGGGCTGGAGGTGAACACACAGGGAGAGCGCTGCGTCGGACGCTGCTGGGACTTCGCGCGACAGACGCAGCTGAGGATGAATGAGACTCTGAGAACTATCACCTCTCGTCTAGGGGTGCTAGAGTCCACAGCGACCCCGGGTCAGCGCCTTTATCCGACCCTTCCAGTCCTCCTGGACCCTCAGCCAGCATCTAACACCACCAGAACACATCTCTCAGCTTCAGGAGGGGCCCCTGCTCGTCCTACCTCCCCTATGGTGGGCTTCACTGTACCCAGTGAGCGTCCACCAGCCTATACTCCACAACCAACAGATGGGCATCTGTCACTCTCTCATGGAGGCAACAGGCCATTTCAAGCTGCTCCAAACCAGCGTCAGGCATTTGCCCCAGTCAATCTCAGAGAGGTTGGCATGGAGATTATGTTCTTGCCCAGTGGGGTGCAGATGTTCTTTGTGTCTGCTGAGGGTCATGTCAGCGCCCCTTCTTATCCAGGGTATCTGCGAATAATCATATACAGCTCTGACAGCAGTACTGGCTATGCCCCAGCATACCTGCAGGTTTGTGATTGGATCTACCCACTGTACCCAGACTCACCAGTCTTTCTTAGCAACAAAGGTGTGTTCACATTTCCTGACACCACAGCAGCAGTGCCAGGGTCCTACGTTGGGGTTGTGCTGTCCTCAGAGCTGCCTGCAGCAGACAGGGATCTGTTCCAGGAACAGCTGTCAGTGTTGGCTCAGCTCAGGGTCCAGGTAGATGAAGAACAATGTGGTGCTACAGGAACAGACTCAAACCTGAGTGAGAAGTTTCCTCCTTCAGAAACACCAGGAGGGGAGGAGAAAACTGTTCCTGTGTGGAGTGAAAAAATGTCACAGAGCATTCTAGCAGGGTCCTCCTGGCTGGGTCGGGGACTTGTGCGAGGAGCTGAAGCTACCGGTAAAGCCATCCAGAGAGGAGCAACTAAATTACGAGAAAACATCACTCCAGAGGAGACGCCAGCAGAGGTCAGCCCCAAGGTCACCAAGGGCCTAAATGCAGCCAAGCAGGCCACTGGGGGTGCTGTAAAAGTCAGCCAGTTTCTAGTGGATGGTGTTGCTGCTGTAGCAGGTCGAGTTGGGAAAGAACTTGCTCCACACGTGAAAAAACACGGTACTAAACTCATCCCAGAATCCCTCAAGAATAGCAAAGATGGCTGCTCCAAAATGGATGGAGCCAAGCTAGTGGCAGGAAGCAGCATACAAGGTTTATCAACTCTCTGGTCAAGTCTGGAGACAGCAGCAAAAACTATTGGCAAAAGTGTAACTTCAGAGACGGTGACTACTGTGAGGCACAAGTATGGAGATGAGGCAGGACAAGCTGCAGACACTGCAGTCCAGTCTGCTGTCAATGTAGGTGTCACAGCATTTAATGTGGACAATCTGGGCATCAAGGGTGTACTGAAGGCCACAGGCAAGCAAACTGCAAAAGCAATGCGCAACAATCGGCGAGCATCACAGGACACCGATGAAAGTGAAACCCGTCCATTACTCGGAAGATGGGAGAAACTGATATCAGAAATTATGAGTTATCCCAACTGCAAGCAGAAGTCGAGCAAGAGAGAGAGGTCAAAGAACGAGTGGAGGACCAGATATGAGACACAGCTGGAGTTGAACGAGCAGCTGGAGAAACAAATCAGTGTCGTTCGAGAGAGACTCGAGACCCTCCGCGGTGATCCCGCAG

Function

symbol description
spg20 Predicted to enable ubiquitin protein ligase binding activity. Acts upstream of or within several processes, including adipose tissue development; negative regulation of BMP signaling pathway; and negative regulation of collateral sprouting in absence of injury. Located in lipid droplet and synapse. Is expressed in dorsal root ganglion; olfactory epithelium; and trigeminal ganglion. Used to study Troyer syndrome. Human ortholog(s) of this gene implicated in Troyer syndrome. Orthologous to human SPART (spartin).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
K19366 SPG20; spartin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16711244_16719831.mRNA True 1870 mRNA 0.52 9 16711244 16719831

Neighbor

gene id symbol gene type direction distance location
CI01000304_16684166_16704849 DCLK1 coding downstream 5150 16684060 ~ 16706094 (-)
CI01000304_16651076_16668623 DCLK1, DCLK1A, DCLK2 coding downstream 42329 16649866 ~ 16668915 (-)
CI01000304_16451635_16453520 NA coding downstream 254687 16451377 ~ 16456557 (-)
CI01000304_16414561_16417605 RFC3 coding downstream 293639 16414502 ~ 16417605 (-)
CI01000304_16402321_16404006 NA coding downstream 307238 16401611 ~ 16404006 (-)
CI01000304_16722727_16724691 CCNA1 coding upstream 2736 16722567 ~ 16724848 (-)
CI01000304_16746258_16751678 SMAD9.S, SMAD8A, SMAD9, SMAD8C coding upstream 25872 16745703 ~ 16751678 (-)
CI01000304_16754929_16761111 ALG5 coding upstream 34893 16754724 ~ 16761111 (-)
CI01000304_16765458_16765853 NA coding upstream 45308 16765139 ~ 16765853 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H coding upstream 49586 16769417 ~ 16780398 (-)
G428681 NA non-coding downstream 102230 16603550 ~ 16609014 (-)
G428638 NA non-coding downstream 116735 16587475 ~ 16594509 (-)
G428547 NA non-coding downstream 430723 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 490831 16220029 ~ 16220413 (-)
G428509 NA non-coding downstream 491352 16218523 ~ 16219892 (-)
G428707 NA non-coding upstream 92353 16812184 ~ 16812467 (-)
G428710 NA non-coding upstream 159238 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 166623 16886454 ~ 16886952 (-)
G428713 NA non-coding upstream 194978 16914809 ~ 16916803 (-)
G428729 NA non-coding upstream 231370 16951201 ~ 16955072 (-)
G427376 NA other downstream 1449839 15258964 ~ 15261405 (-)
G427423 NA other downstream 2349352 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2423640 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2441673 14265476 ~ 14269571 (-)
G427309 NA other downstream 2502945 14181932 ~ 14237078 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 134734 16854565 ~ 16860911 (-)
G429331 NA other upstream 1204032 17923863 ~ 17924684 (-)
G429499 NA other upstream 1517888 18237719 ~ 18238319 (-)
G429673 NA other upstream 1866611 18586442 ~ 18591856 (-)

Expression


Co-expression Network