CI01000304_16722727_16724691 (CCNA1)


Basic Information

Item Value
gene id CI01000304_16722727_16724691
gene name CCNA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16722567 ~ 16724848 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16722727_16724691.mRNA
ACTTTGAGCCACTCACTGAGAGTTTATTGTTTCTTTAAGAGTTTGACGCGGCAAAAGGTTTGTTTTGAACGATTTAGTTTTTAATGTCTTTGATTCAAATAGTTGCTTATAATTTGAAGTGATGTTGAGTGGACTCTTCTTTTCAGAAGAGATAAAGATGGCTTCCCGTAGCTTCGCTCCTCTTTCCAGTCGTCAGGAAAACATCATGGGCCTGGGAAGAGCGGATGGCCTGCGCGCTCATAAACCCGGCCAAAGGGTTGTGCTCGGTGTTTTGACCGAGAATGATCAGCATAATCGAGTATTTGGCCAGGTTTCATCCAAATATGAGCCAGCTTTTCATGATGCATCTATCCGTGACGTTAGCACAAACAGTGCTACACTTGGTGATCATGTGACTGAGTCAGTCGTGGTGCAGTCAGTTAAACAATCAACCTCATTCTTGCTGCCTTCAGAGCTTCTCCTTGTAGATGATGCTGTCCAAGATCTTGGCTCAGAGGAGGAGGCTGCTTCCTCTGAGGATGTCTTGTGTGTTCCAGAATATGCTGAGGACATCCACAGATACCTGCGTGAATGTGAAGTTGGTATAGTTTACTCTTATCCAGTTGTCTGCGTAGCCCTGTATCTGTCTGTAATGCACTACGTTTCTCAGGTTAAATACAGGCCGAAGCCTGGCTATATGAGAAAGCAGCCTGATGTAACCAACTGTATGAGAATCATCCTTGTCGACTGGCTGGTTGAAGTTGGCGAGGAATACAAGCTGTGCTCGGAGACTCTCTATCTGGCTGTTAATTACCTGGACCGCTTCCTTTCGTGCATGTCTGTCCTGAGAGGGAAATTGCAGCTTGTAGGAACAGCTGCTGTACTCCTGGCTGCGAAATACGAGGAGGTGTATCCTCCGGAAGTGGACGAGTTTGTGTACATTACGGATGACACCTACACGAAGAAACAGCTGCTTCGGATGGAGCAGCACCTGCTCCGAGTGCTTGCTTTTGACATGACCGCACCCACAGTTCACCAGTTTTTGATGCAGTACACTTTGGAGGAGCATATCTGTGCCAGGACCGTGAACCTTGCTTTGTATCTTTCAGAGTTGAGCCTGCTTGAAGTGGATCCCTTTGTGCAGTATCTACCTTCCAAGACTGCCGCAGCTGCATATTGTCTGGCCAACTACACTCTAAATGGGGCTCTGTGGCCTGAGAACCTGTATGCCTTCACTGGTTACTCACTGGCAGTGATCAGCCCATGTCTGAAAGAGCTTCATAAGCTCCATCTAGGGGCAGAAAGTCGCCCCCAACAGGCTATCCAAGAGAAGTACAAGAGCTCAAAATATTGTGGCGTGTCCTTGATTGAACCTGTGGAGTCTCTGCCTCTCCCTTGATGATTTGGTGACCGCATGAATTCCTTGGCCAACAAATGAACTGCAGCGCTTAAGTCTCTTGTAAATATTGAATGAAATTTGCTTTTTAAATGTGGCTTTTAAAATTTTTAAAATGTGATTTTTATCATAGGTTGCTTTATACTATAATGTAATCAATAAA

Function

symbol description
ccna1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin A2-CDK2 complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human CCNA1 (cyclin A1).

NR:

description
cyclin A

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K06627 CCNA; cyclin-A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16722727_16724691.mRNA True 1538 mRNA 0.46 7 16722567 16724848

Neighbor

gene id symbol gene type direction distance location
CI01000304_16711244_16719831 SPG20A, SPG20 coding downstream 2736 16711244 ~ 16719831 (-)
CI01000304_16684166_16704849 DCLK1 coding downstream 16473 16684060 ~ 16706094 (-)
CI01000304_16651076_16668623 DCLK1, DCLK1A, DCLK2 coding downstream 53652 16649866 ~ 16668915 (-)
CI01000304_16451635_16453520 NA coding downstream 266010 16451377 ~ 16456557 (-)
CI01000304_16414561_16417605 RFC3 coding downstream 304962 16414502 ~ 16417605 (-)
CI01000304_16746258_16751678 SMAD9.S, SMAD8A, SMAD9, SMAD8C coding upstream 20855 16745703 ~ 16751678 (-)
CI01000304_16754929_16761111 ALG5 coding upstream 29876 16754724 ~ 16761111 (-)
CI01000304_16765458_16765853 NA coding upstream 40291 16765139 ~ 16765853 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H coding upstream 44569 16769417 ~ 16780398 (-)
CI01000304_16783635_16804462 CLG3H21ORF91 coding upstream 58688 16783536 ~ 16804462 (-)
G428681 NA non-coding downstream 113553 16603550 ~ 16609014 (-)
G428638 NA non-coding downstream 128058 16587475 ~ 16594509 (-)
G428547 NA non-coding downstream 442046 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 502154 16220029 ~ 16220413 (-)
G428509 NA non-coding downstream 502675 16218523 ~ 16219892 (-)
G428707 NA non-coding upstream 87336 16812184 ~ 16812467 (-)
G428710 NA non-coding upstream 154221 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 161606 16886454 ~ 16886952 (-)
G428713 NA non-coding upstream 189961 16914809 ~ 16916803 (-)
G428729 NA non-coding upstream 226353 16951201 ~ 16955072 (-)
G427376 NA other downstream 1461162 15258964 ~ 15261405 (-)
G427423 NA other downstream 2360675 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2434963 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2452996 14265476 ~ 14269571 (-)
G427309 NA other downstream 2514268 14181932 ~ 14237078 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 129717 16854565 ~ 16860911 (-)
G429331 NA other upstream 1199015 17923863 ~ 17924684 (-)
G429499 NA other upstream 1512871 18237719 ~ 18238319 (-)
G429673 NA other upstream 1861594 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location